This repo contains scripts to process raw 16S or ITS sequencing data into processed data like dereplicated sequences, OTU tables, etc. The platform is designed in such a manner that the user interfaces with a single script, Master.py, which takes as input the path to the folder containing the dataset raw files. Each dataset folder must contain a machine-readable text file, called a summary file, which gives instructions to Master.py.

You can read more about how to use the pipeline and what it does in the documentation.