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bacon's Introduction

BNL Astro CONda (BACON)

Bacon is a set of scripts for local installation of conda environment at BNL.

It is composed of two essential scripts:

  • install_anaconda.sh will install a vanilla anaconda environment. Run once (or clean)
  • setup_cons.sh will additionally install set of of conda packages. Can be safely rerun multiple times.
  • setup_pip.sh will additionally install set of of pip packages. Can be safely rerun multiple times.

Things are setup in settings.sh.

Settings

  • TARGET is the target directory where installation should be performed
  • TMP is the tmp directory where anaconda installer is downloaded to
  • ANACONDA is url to the desired based anaconda
  • REPOS is the space delimeted list of github repos. Each repot should have an appropriate setup.py in its root.

bacon's People

Contributors

slosar avatar

Watchers

Erin Sheldon avatar James Cloos avatar avatar

bacon's Issues

use a requirements file

make a file with a list of the packages you want. Usually call it requirements.txt

For example

galsim
ngmix
pytest
fitsio
esutil
sep

etc.

Make sure your ~/.condarc file has conda-forge at the top of the channels.

channels:
  - conda-forge
  - defaults

You can install miniconda rather than full anaconda

Then run

# first install mamba; it is way better than conda
conda install -y mamba
# from now on use mamba
mamba install -y --file requirements.txt

After that you can try to install some pip dependencies that are not on conda forge. But beware that pip can mess up your environment pretty badly.

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