Giter VIP home page Giter VIP logo

vttshi's Introduction

VTTSHI

Summary

The pathophysiology of this virus is complex and difficult to investigate in humans. To study the human viral interactome, we took an integrated network-biology-transcriptome approach. Using data from five sources, we constructed a comprehensive human interactome based on high-quality interaction protein-protein interactions. A viral-targets-transcriptomes-specific human interactome (VTTSHI) was then produced based on the viral protein targets and transcriptome data of HPV and HSV respectively. To identify nodes pivotal to viral pathogenicity, we used topological clustering and pathway enrichment analysis.

For complete details on the use and execution of this protocol, please refer to Kumar et al. [Integrative Network Biology Framework Elucidates Molecular Mechanisms of SARS-CoV-2 Pathogenesis] Kumar N, Mishra B, Mehmood A. Integrative network biology framework elucidates molecular mechanisms of SARS-CoV-2 pathogenesis. iScience 23 (9): 101526.

vttshi's People

Contributors

nilesh-iiita avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.