Comments (3)
Running into the same issue myself on an HPC running Slurm.
Issue #368 seems to be a duplicate of this, this is definitely not a one-off.
from hh-suite.
hhblits_omp
has issues with many cores for some reason, that we were not able to pinpoint.
I recommend to use a script similar to the following as a workaround:
https://github.com/soedinglab/hhdatabase_cif70/blob/master/pdb70_hhblits_lock.sh
from hh-suite.
Running hhblits manually with command in the picture, it works fine sometims, but sometims end with erros. Jobs submited by slurm.
strace running command, following error occurs. No idea how to control that. Any suggestion?
'Thread creation failed: Invalid "..., 40Thread creation failed: Invalid argument'
from hh-suite.
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from hh-suite.