Comments (2)
Right on! Thanks for the pointer. This has gotten me much closer.
One last question : I'm having trouble understanding the provenance of the uniref30_2106.idx file. Ive noticed that mmseqs2 createindex can sometimes create .idx files, but do these fundamentally differ from the .index format found in other databases that mmseqs can download through its internal databases command?
Thanks again!
Edit : -----
I'm currently struggling with the folllowing error with the expandaln command. I suspect that this may be because the prepared .idx file is an incorrect database type. Ive also noticed that I can get .idx files from either the createindex command, or by using touchdb to preload the database. Are these idx filetypes fundamentally different?
Index version: 16
Generated by: e4aae9271f34a2e68e4d95a7356ef0bfe3ed9dc4
ScoreMatrix: VTML80.out
Index version: 16
Generated by: e4aae9271f34a2e68e4d95a7356ef0bfe3ed9dc4
ScoreMatrix: VTML80.out
Invalid database read for database data file=../../databases/UniRef50.idx, database index=../../databases/UniRef50.idx.index
getData: local id (4294967295) >= db size (22)
from mmseqs2-app.
Yes this is part of my fork:
https://github.com/milot-mirdita/mmseqs2
We are working on finishing the changes up and integrating them back into the main MMseqs2 repo.
from mmseqs2-app.
Related Issues (20)
- Large Index Files for Nucleotide Sequences HOT 4
- local colabfold_batch cannot communicate with local mmseq2 web api HOT 19
- Full target/query alignment being truncated in web UI HOT 3
- docker install error: ghcr.io pull error HOT 7
- pairaln mode does not support the binary version of the taxonomy files HOT 5
- mmseqs-server: errors when called from colabfold_batch HOT 2
- App does not work with latest mmseqs version HOT 2
- Pass --max-seqs through GUI or server API?
- Implement three diferent states for visualizing query structure in Structure Viewer
- Possible to add single or multiple sequences to existing database
- Temporary redirect issue HOT 6
- Foldseek all database view rework
- Running it in kubernetes HOT 4
- Historical jobs not loaded: "Job failed. Please try again later."
- jobs stuck in PENDING status with local mmseqs-web API HOT 2
- "docker-compose run db-setup PDB" not working HOT 2
- host not found in upstream "mmseqs-web-api HOT 7
- "405 Not Allowed" returned for the queries HOT 4
- Foldseek jobs are not persistent from GUI HOT 5
- Local Foldseek searches are no longer working HOT 6
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from mmseqs2-app.