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bioinformatics-labs's Introduction

About Me

Bio

Hello! ๐Ÿ‘‹ I'm Sophie, a senior computer science student with a passion for bioinformatics. I'm enthusiastic about combining computational techniques with wet lab experiments to unravel the mysteries of life sciences. ๐Ÿงฌ๐Ÿ”ฌ

Education

  • Current: Senior Computer Science Student in the Early Entry program for Bioinformatics (Schrodinger's Grad Student)
  • University: University of North Carolina at Charlotte
  • Concentration: Bioinformatics

Interests

  • Genomic Analysis ๐Ÿงฌ
  • Front End Design and Accessibility ๐Ÿค–
  • Computational Biology Algorithms ๐Ÿงฎ
  • Data Visualization for Biological Insights ๐Ÿ“Š

Skills

  • Programming Languages: Python, Java, R/RMarkdown, BASH
  • Bioinformatics Tools: Seaview, MrBayes
  • Version Control: Git, GitHub
  • R Packages: MSA, Phangorn, Phytools

Projects

  • DeGenPrime: DeGenPrime is a primer design tool compatible with single gene and gene family alignments that unlocks the tree of life like never before. I work on the front end of the program (still currently in development), with a focus on maintaining a eye-pleasing color scheme that is accessible to those with colorblindness or other visual impairments. I understand how scary the command line can be to those that don't have experience with it, so I am working with my PI to create GUIs for our tools, furthering the reach of these computational resources. The DeGenPrime preprint can be accessed at this link.

Contact

Feel free to reach out if you'd like to collaborate or discuss anything related to bioinformatics, computer science, or anything science! ๐Ÿš€๐Ÿฆ ๐Ÿงซ๐Ÿ”ฌ

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