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This project forked from m-albert/seg_track_shape_2d
seg_track_shape_2d's Introduction
Python code to analyze cell shape changes over time in 2d
- segments cells using stardist
- tracks cells using trackpy
- visualises tracks and plots shape features
- open terminal and navigate to folder /seg_track_shape_2d
- conda activate seg_track_shape
- jupyter notebook (a browser window should open)
- in the browser, open the notebook segment_track_analyse.ipynb
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