Francis is a friendly image analysis interface system.

It allows pipeline creation with simple image analysis processes (erosion, threshold, ...).

You can import nifti data into Francis to make some basics operations and save the result.

Clone this repository

git clone [email protected]:Hboni/francis.git

Install python requirements

pip install -r ./requirements.txt

Launch the application

python ./main.py

• PyQt5
• scikit-image
• nibabel
• pandas

To contribute to this project, you must clone this repository on you Windows or Ubuntu computer (other linux distros are not tested).

git clone https://github.com/Hboni/francis.git

It is recommended to use a python virtualenv to install dependencies:

cd francis
pip3 install virtualenv
python3 -m venv venv
source venv/bin/activate

pip install -r requirements.txt

To develop in this project, it is also recommended to use pre-commit.

pip install pre-commit

As Francis uses PyQt5 for its interface, it happens that on linux some library are missing, it can be needed to install them. (only tested on recent ubuntu)

For debian:

sudo apt-get install -y xvfb libxkbcommon-x11-0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-xinerama0 libxcb-xfixes0