spacetelescope / costools Goto Github PK

~/Documents/GitHub/cos_flares/src/cos_reduction.py in split_corrtag(self, output_path, increment, starttime, endtime, time_list)
    103                               endtime=endtime, time_list=time_list)
    104 
--> 105             splittag.splittag(corrtag_b, os.path.join(output_path,
    106                                                       'split_{}'.format(self.rootname[i])),
    107                               increment=increment, starttime=starttime,

~/opt/anaconda3/lib/python3.9/site-packages/costools/splittag.py in splittag(infiles, outroot, starttime, increment, endtime, time_list, verbosity)
    152         time_list = None
    153 
--> 154     SPLT.splittag(infiles=infiles, outroot=outroot,
    155                   starttime=starttime, increment=increment, endtime=endtime,
    156                   time_list=time_list, verbosity=verbosity)

~/opt/anaconda3/lib/python3.9/site-packages/calcos/splittag.py in splittag(infiles, outroot, starttime, increment, endtime, time_list, verbosity)
     50     inlist = glob.glob(infiles)
     51     for input in inlist:
---> 52         splitOneTag(input, outroot, starttime, increment, endtime,
     53                     time_list, verbosity)
     54 

~/opt/anaconda3/lib/python3.9/site-packages/calcos/splittag.py in splitOneTag(input, outroot, starttime, increment, endtime, time_list, verbosity)
    133             ofd.append(out_gti_hdu)
    134 
--> 135         out_timeline_hdu = createNewTimeline(timeline_hdu, t0, t1)
    136         if out_timeline_hdu is not None:
    137             ofd.append(out_timeline_hdu)

~/opt/anaconda3/lib/python3.9/site-packages/calcos/splittag.py in createNewTimeline(timeline_hdu, t0, t1)
    673         # of the input TIMELINE table.
    674         # This implicitly assumes that the time increment is one second.
--> 675         (i_start, i_end)= ccos.range(time_col, t0, math.ceil(t1) + 0.1)
    676         out_nrows = i_end - i_start
    677     else:

RuntimeError: (30, 60.1) does not overlap the time array

build: 
  skip: true  # [py2k] 

_________________ ERROR collecting costools/tests/test_noop.py _________________
ImportError while importing test module '/home/runner/work/stenv/stenv/costools/costools/tests/test_noop.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
../../../../micromamba/envs/stenv-Linux-py3.12/lib/python3.12/importlib/__init__.py:90: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
costools/__init__.py:3: in <module>
    from pkg_resources import get_distribution, DistributionNotFound
E   ModuleNotFoundError: No module named 'pkg_resources'

Running calcos-3.0/setup.py -q bdist_egg --dist-dir /var/folders/jp/y94kfdg15xjgpplw8yrqt3jc0000gn/T/easy_install-3xpdprnf/calcos-3.0/egg-dist-tmp-fkcknzz_
error: Setup script exited with error: each element of 'ext_modules' option must be an Extension instance or 2-tuple

from costools import x1dcorr
x1dcorr.x1dcorr(["test_1_corrtag_a.fits", "test_1_corrtag_b.fits"], outdir="test/", update_input=True, find=True, verbosity=2)

Input     /Users/parke/Google Drive/Research/dimming/data/test_1_corrtag_a.fits
OutFlt    test/test_1_flt_a.fits
OutCounts test/test_1_counts_a.fits
x1d       test/test_1_x1d_a.fits

---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
<ipython-input-18-66f3f7e5ffe2> in <module>
----> 1 x1dcorr.x1dcorr(["test_1_corrtag_a.fits", "test_1_corrtag_b.fits"], outdir="test/", update_input=True, find=True, verbosity=2)

~/anaconda3/envs/astroconda/lib/python3.6/site-packages/costools/x1dcorr.py in x1dcorr(input, outdir, update_input, find, cutoff, location, extrsize, verbosity)
    183                     location=locn, extrsize=extrsz,
    184                     find_target={"flag": find, "cutoff": cutoff},
--> 185                     verbosity=verbosity)
    186 
    187 

~/anaconda3/envs/astroconda/lib/python3.6/site-packages/calcos/x1d.py in extractSpec(inlist, outdir, update_input, location, extrsize, find_target, verbosity)
    205                            x1d_ab_list[i])
    206             is_wavecal = makeFltCounts(cal_ver, corrtag_list[i],
--> 207                                        flt_list[i], counts_list[i])
    208             extract.extract1D(flt_list[i], counts_list[i], x1d_ab_list[i],
    209                               location=location, extrsize=extrsize,

~/anaconda3/envs/astroconda/lib/python3.6/site-packages/calcos/x1d.py in makeFltCounts(cal_ver, corrtag, flt, counts)
    446                 reffiles["brftab"])
    447     dq_array = timetag.doDqicorr(events, corrtag, info, switches, reffiles,
--> 448                                  phdr, headers[1], minmax_shift_dict)
    449 
    450     timetag.writeImages(x, y, epsilon, dq,

TypeError: doDqicorr() missing 2 required positional arguments: 'traceprofile' and 'gti'