TODO: Add a description of ManyBugs.
The ManyBugs dataset is compatible with BugZoo, a platform for studying historical software bugs. To install the ManyBugs dataset to your local machine, simply execute the following:
$ pip3 install --upgrade bugzoo
$ bugzoo source add manybugs https://github.com/squaresLab/ManyBugs
$ bugzoo source update
mv -f .deps/connections.Tpo .deps/connections.Po
gcc -DHAVE_CONFIG_H -DLIBRARY_DIR="\"/usr/local/lib\"" -I. -I.. -D_REENTRANT -D__EXTENSIONS__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGE_FILES -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -save-temps -Wall -W -Wshadow -pedantic -std=gnu99 -MT network.o -MD -MP -MF .deps/network.Tpo -c -o network.o network.c
mv -f .deps/network.Tpo .deps/network.Po
gcc -DHAVE_CONFIG_H -DLIBRARY_DIR="\"/usr/local/lib\"" -I. -I.. -D_REENTRANT -D__EXTENSIONS__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGE_FILES -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -save-temps -Wall -W -Wshadow -pedantic -std=gnu99 -MT configfile.o -MD -MP -MF .deps/configfile.Tpo -c -o configfile.o configfile.c
�[91mconfigfile.c: In function 'config_setup_connection':
�[0m
�[91mconfigfile.c:329:11: error: 'specific_config' has no member named 'ssl_ctx'
PATCH(ssl_ctx);
^
�[0m
�[91mconfigfile.c:329:23: error: 'specific_config' has no member named 'ssl_ctx'
PATCH(ssl_ctx);
^
�[0m
�[91mconfigfile.c: In function 'config_patch_connection':
�[0m
�[91mconfigfile.c:389:14: error: 'specific_config' has no member named 'ssl_ctx'
PATCH(ssl_ctx);
^
configfile.c:389:26: error: 'specific_config' has no member named 'ssl_ctx'
PATCH(ssl_ctx);
^
�[0m
make[4]: Leaving directory `/experiment/src/src'
�[91mmake[4]: *** [configfile.o] Error 1
�[0m
�[91mmake[3]: *** [all-recursive] Error 1
�[0m
make[3]: Leaving directory `/experiment/src/src'
�[91mmake[2]: *** [all] Error 2
�[0m
make[2]: Leaving directory `/experiment/src/src'
�[91mmake[1]: *** [all-recursive] Error 1
�[0m
make[1]: Leaving directory `/experiment/src'
�[91mmake: *** [all] Error 2
�[0m
�[91mTraceback (most recent call last):
File "./preprocess", line 35, in <module>
�[0m
�[91m subprocess.check_call('make clean && make', shell=True)
File "/usr/lib/python2.7/subprocess.py", line 540, in check_call
�[0m
�[91m raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'make clean && make' returned non-zero exit status 2
�[0m
Traceback (most recent call last):
File "/home/afsoon/BugZoo/bin/bugzoo", line 9, in <module>
load_entry_point('bugzoo==1.1.4', 'console_scripts', 'bugzoo')()
File "/home/afsoon/BugZoo/lib/python3.5/site-packages/bugzoo/cli.py", line 524, in main
args.func(args)
File "/home/afsoon/BugZoo/lib/python3.5/site-packages/bugzoo/cli.py", line 486, in <lambda>
cmd.set_defaults(func=lambda args: build_bug(rbox, args.bug, args.force))
File "/home/afsoon/BugZoo/lib/python3.5/site-packages/bugzoo/cli.py", line 94, in build_bug
bug.build(force=force)
File "/home/afsoon/BugZoo/lib/python3.5/site-packages/bugzoo/bug.py", line 309, in build
self.__build_instructions.build(force=force, quiet=quiet)
File "/home/afsoon/BugZoo/lib/python3.5/site-packages/bugzoo/build.py", line 230, in build
raise ImageBuildFailed(self.tag, log)
bugzoo.errors.ImageBuildFailed: squareslab/manybugs:lighttpd-2661-2662
docker@6ce0334bac9f:/experiment$ ./test.sh p17
basename: missing operand
Try 'basename --help' for more information.
./test.sh: line 5: [: =: unary operator expected
./symlink.t .. mod_proxy_core_address.c.158: (trace) resolving 127.0.0.1 on port 1026
mod_proxy_core_address.c.63: (trace) adding 127.0.0.1:1026 to the address-pool
mod_proxy_core_address.c.158: (trace) resolving 127.0.0.1 on port 1026
mod_proxy_core_address.c.63: (trace) adding 127.0.0.1:1026 to the address-pool
2018-02-07 00:03:27: (server.c.1445) WARNING: unknown config-key: auth.backend.ldap.url (ignored)
./symlink.t .. 1/10 # status failed: expected '200', got '403'
# Failed test 'allow: symlinked file'
# at ./symlink.t line 56.
# status failed: expected '200', got '403'
# Failed test 'allow: directly symlinked dir'
# at ./symlink.t line 65.
# status failed: expected '200', got '403'
# Failed test 'allow: symlinked dir in path'
# at ./symlink.t line 74.
# Looks like you failed 3 tests of 10.
./symlink.t .. Dubious, test returned 3 (wstat 768, 0x300)
Failed 3/10 subtests
Test Summary Report
-------------------
./symlink.t (Wstat: 768 Tests: 10 Failed: 3)
Failed tests: 3-5
Non-zero exit status: 3
Files=1, Tests=10, 1 wallclock secs ( 0.02 usr 0.00 sys + 0.04 cusr 0.00 csys = 0.06 CPU)
Result: FAIL
Failed 1/1 test programs. 3/10 subtests failed.
Note that identical behaviour is also observed on the reference ManyBugs virtual machine -- this isn't an issue with our Docker container images.
Hello,
I am attempting to recreate a couple of the previously reported repairs on gmp:14166-14167 by running genprog with the previously defined --seed. However, when I run genprog configuration-default, genprog completes its sanity check, and coverage, but starts to report
cachingRep: test_cases: wait: Not_found
cachingRep: test_cases: p1 assumed failed
cachingRep: test_cases: p2 assumed failed
for each positive test when evaluating the individuals in a population. Genprog also reports a fitness of 1 next to each genome string. I am assuming this is unexpected behavior, is there a known fix?
My current working configuration is:
--multi-file
--search ga
--compiler-command ./compile.sh EXE_NAME > /dev/null
--test-command TEST_SCRIPT TEST_NAME >& /dev/null
--crossover subset
--rep cilpatch
--suffix-extension .c
--describe-machine
--pos-tests 144
--neg-tests 1
--program manifest.txt
--prefix preprocessed
--seed 4
--test-script ./test.sh
--popsize 40
--generations 10
--promut 1
--mutp 0
--fitness-in-parallel 2
--rep-cache default.cache
--skip-failed-sanity-check
Thanks for your time.
In the gzip scenario the file bug-info/scenario-data.txt shows the commit hashes of the buggy and fixed versions as follows:
bug revision: 3eb6091d69a
fix revision: 884ef6d16c6
however, none of these commit hashes exists in the filenames of the buggy and fixed version of the files and nor in the scenario name.
If you run test.sh from any directory other than /experiment it returns errors because it's using relative path in scripts.
running:
bugzoo source add manybugs https://github.com/squaresLab/ManyBugs.git
bugzoo bug build manybugs:gmp:13420-13421
bugzoo container launch --with genprog manybugs:gmp:13420-13421
..in container..
%> genprog configuration-default
<...stdout...>
p34: true (1)
p35: false (0)
ABORT:
cachingRepresentation: sanity check failed (p35)
Rep: saving test cache
Variant Test Case Queries: 0
"Test Suite Evaluations": 0
Compile Failures: 0
Wall-Clock Seconds Elapsed: 23.2172
Activity Name Count Seconds = Percent of Total Time
compile 1 3.074 = 13.3167%
test 38 20.006 = 86.6773%
TOTAL 23.081 = 99.3797% (avg CPU usage)
docker@3342f2c54005:/experiment$
The php scenarios don't compile with --enable-debug
docker@e3c09a8785b8:/experiment/src$ make
Generating phar.phar
Fatal error: Unknown: Failed opening required 'ext/phar/phar.php' (include_path='.:/usr/local/lib/php') in Unknown on line 0
Makefile:312: recipe for target 'ext/phar/phar.phar' failed
make: *** [ext/phar/phar.phar] Error 255
docker@e3c09a8785b8:/experiment/src$
The two PHP scenarios I encountered this error on were 2011-04-30-9c285fddbb-93f65cdeac and 2011-02-19-356b619487-a3a5157286.
The same failure message appeared on both a desktop and a server; the only difference in the error message was the number of cores used by make.
It's unrelated to the other PHP issue that resulted from the AUFS symlink problem - both systems are using overlay2 as a storage driver.
Error message below - any advice you can provide would be much appreciated!
-Joe
/bin/sh: line 1: 13775 Segmentation fault (core dumped) if test -x "/experiment/src/sapi/cli/php"; then /experiment/src/build/shtool echo -n -- "/experiment/src/sapi/cli/php -n"; if test "x" != "x"; then /experiment/src/build/shtool echo -n -- " -d extension_dir=/experiment/src/modules"; for i in bz2 zlib phar; do if test -f "/experiment/src/modules/$i.la"; then . /experiment/src/modules/$i.la; /experiment/src/build/shtool echo -n -- " -d extension=$dlname"; fi; done; fi; else /experiment/src/build/shtool echo -n -- "/experiment/src/sapi/cli/php"; fi; -d 'open_basedir=' -d 'output_buffering=0' -d 'memory_limit=-1' -d phar.readonly=0 -d 'safe_mode=0' /experiment/src/ext/phar/build_precommand.php > ext/phar/phar.php
make: *** [ext/phar/phar.php] Error 139
Traceback (most recent call last):
File "/experiment/prepare.py", line 81, in
cmd('cd /experiment/src && make -j{}'.format(multiprocessing.cpu_count()))
File "/experiment/prepare.py", line 45, in cmd
subprocess.check_call(cmd, shell=True)
File "/usr/lib/python2.7/subprocess.py", line 540, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError
: Command 'cd /experiment/src && make -j4' returned non-zero exit status 2
Traceback (most recent call last):
File "/home/joe/.local/bin/bugzoo", line 11, in
sys.exit(main())
File "/home/joe/.local/lib/python3.6/site-packages/bugzoo/cli/init.py", line 541, in main
args.func(args)
File "/home/joe/.local/lib/python3.6/site-packages/bugzoo/cli/init.py", line 489, in
cmd.set_defaults(func=lambda args: build_bug(rbox, args.bug, args.force))
File "/home/joe/.local/lib/python3.6/site-packages/bugzoo/cli/init.py", line 103, in build_bug
rbox.bugs.build(bug, force=force)
File "/home/joe/.local/lib/python3.6/site-packages/bugzoo/mgr/bug.py", line 82, in build
quiet=quiet)
File "/home/joe/.local/lib/python3.6/site-packages/bugzoo/mgr/build.py", line 124, in build
raise ImageBuildFailed(name, log)
bugzoo.exceptions.ImageBuildFailed: failed to build Docker image: squareslab/manybugs:php-2011-04-30-9c285fddbb-93f65cdeac
...
/bin/sh ../libtool --tag=CC --mode=link gcc -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -Wall -W -Wshadow -pedantic -std=gnu99 -o spawn-fcgi spawn-fcgi.o -pthread -lgthread-2.0 -lglib-2.0
libtool: link: gcc -shared .libs/mod_accesslog.o -pthread -pthread -Wl,-soname -Wl,mod_accesslog.so -o .libs/mod_accesslog.so
/bin/sh ../libtool --tag=CC --mode=link gcc -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -Wall -W -Wshadow -pedantic -std=gnu99 -o proc_open proc_open-proc_open.o proc_open-buffer.o
libtool: link: ( cd ".libs" && rm -f "mod_auth.la" && ln -s "../mod_auth.la" "mod_auth.la" )
libtool: link: ( cd ".libs" && rm -f "mod_status.la" && ln -s "../mod_status.la" "mod_status.la" )
/bin/sh ../libtool --tag=CC --mode=link gcc -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -Wall -W -Wshadow -pedantic -std=gnu99 -o lemon lemon.o
libtool: link: ( cd ".libs" && rm -f "mod_compress.la" && ln -s "../mod_compress.la" "mod_compress.la" )
libtool: link: ( cd ".libs" && rm -f "mod_rewrite.la" && ln -s "../mod_rewrite.la" "mod_rewrite.la" )
rm -f configparser.h
../src/lemon -q ./configparser.y ./lempar.c
make[3]: ../src/lemon: Command not found
rm -f configparser.h
make[3]: *** [configparser.h] Error 127
make[3]: *** Waiting for unfinished jobs....
../src/lemon -q ./configparser.y ./lempar.c
make[3]: ../src/lemon: Command not found
make[3]: *** [configparser.c] Error 127
libtool: link: ( cd ".libs" && rm -f "mod_redirect.la" && ln -s "../mod_redirect.la" "mod_redirect.la" )
libtool: link: ( cd ".libs" && rm -f "mod_accesslog.la" && ln -s "../mod_accesslog.la" "mod_accesslog.la" )
libtool: link: gcc -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -Wall -W -Wshadow -pedantic -std=gnu99 -o lemon lemon.o -pthread
libtool: link: gcc -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -Wall -W -Wshadow -pedantic -std=gnu99 -o proc_open proc_open-proc_open.o proc_open-buffer.o -pthread
libtool: link: gcc -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -Wall -W -Wshadow -pedantic -std=gnu99 -o spawn-fcgi spawn-fcgi.o -pthread -lgthread-2.0 -lglib-2.0 -pthread
make[3]: Leaving directory `/experiment/src/src'
make[2]: Leaving directory `/experiment/src/src'
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/experiment/src'
make: *** [all] Error 2
Fixed version running n1:
mod_proxy_core_address.c.63: (trace) adding 127.0.0.1:1026 to the address-pool
mod_proxy_core_address.c.158: (trace) resolving 127.0.0.1 on port 1026
mod_proxy_core_address.c.63: (trace) adding 127.0.0.1:1026 to the address-pool
2018-02-23 20:14:22: (server.c.1445) WARNING: unknown config-key: auth.backend.ldap.url (ignored)
./request.t .. 1/43 # status failed: expected '200', got '400'
# Failed test 'Hostname in first line as https url'
# at ./request.t line 104.
# status failed: expected '400', got '200'
# status failed: expected '400', got '200'
# status failed: expected '400', got '200'
# status failed: expected '304', got '200'
# Looks like you failed 1 test of 43.
./request.t .. Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/43 subtests
(1 TODO test unexpectedly succeeded)
Test Summary Report
-------------------
./request.t (Wstat: 256 Tests: 43 Failed: 1)
Failed test: 12
TODO passed: 14
Non-zero exit status: 1
Files=1, Tests=43, 0 wallclock secs ( 0.03 usr 0.00 sys + 0.03 cusr 0.03 csys = 0.09 CPU)
Result: FAIL
Failed 1/1 test programs. 1/43 subtests failed.
/experimentABORT:
cachingRepresentation: sanity check failed (p1519)
...
Duplicating the Non-deterministic behavior
for i in $(seq 0 100); do (pushd src && ../gzip-run-tests.pl 1 && popd) |& egrep log ; donefor i in $(seq 0 100); do (./test.sh p1;./test.sh p2; ./test.sh p3; ./test.sh p4; ./test.sh p5; ./test.sh n1) |& grep log ; done Example non-deterministic output from docker container
docker@ef98ab6cce2d:/experiment$ (./test.sh p1;./test.sh p2; ./test.sh p3; ./test.sh p4; ./test.sh p5; ./test.sh n1) |& grep log
PASS: helin-segv.log
PASS: hufts.log
FAIL: memcpy-abuse.log
PASS: stdin.log
PASS: zdiff.log
FAIL: trailing-nul.log
docker@ef98ab6cce2d:/experiment$ (./test.sh p1;./test.sh p2; ./test.sh p3; ./test.sh p4; ./test.sh p5; ./test.sh n1) |& grep log
PASS: helin-segv.log
PASS: hufts.log
FAIL: memcpy-abuse.log
FAIL: stdin.log
PASS: zdiff.log
FAIL: trailing-nul.log
docker@ef98ab6cce2d:/experiment$
Some Debug information and potential workaround
I copied the test infrastructure from the docker container directly to my localhost's infrastructure [Ubuntu 16.04] and, strangely enough, the test results were consistent. I speculated that there may be some instability in the Ubuntu 14 build's libc.so, since it was the only dynamic library I found in the dynamic section of gzip. After updating the Docker infrastructure and specific gzip test case to use Ubuntu 16.04, the test behaved consistently on the docker container.
I cannot build php scenarios. Tried a couple and all result in this:
mv: cannot create hard link '/experiment/bug-info/scenario-data.txt' to '/experiment/000000/main': Operation not permitted
mv: cannot create hard link '/experiment/bug-info/log-msg.txt' to '/experiment/000000/main/streams': Operation not permitted
mv: will not create hard link '/experiment/fixed/main' to directory '/experiment/diffs/main'
mv: will not create hard link '/experiment/preprocessed/main' to directory '/experiment/php/ext'
Traceback (most recent call last):
File "/home/afsoon/BugZoo/bin/bugzoo", line 9, in <module>
load_entry_point('bugzoo==2.0.3', 'console_scripts', 'bugzoo')()
File "/home/afsoon/BugZoo/lib/python3.5/site-packages/bugzoo/cli/__init__.py", line 503, in main
args.func(args)
File "/home/afsoon/BugZoo/lib/python3.5/site-packages/bugzoo/cli/__init__.py", line 465, in <lambda>
cmd.set_defaults(func=lambda args: build_bug(rbox, args.bug, args.force))
File "/home/afsoon/BugZoo/lib/python3.5/site-packages/bugzoo/cli/__init__.py", line 79, in build_bug
rbox.bugs.build(bug, force=force)
File "/home/afsoon/BugZoo/lib/python3.5/site-packages/bugzoo/mgr/bug.py", line 82, in build
quiet=quiet)
File "/home/afsoon/BugZoo/lib/python3.5/site-packages/bugzoo/mgr/build.py", line 124, in build
raise ImageBuildFailed(name, log)
bugzoo.core.errors.ImageBuildFailed: squareslab/manybugs:php-2011-12-10-74343ca506-52c36e60c4
chris@clegoues-ubuntu-vm1:~/bugzoo$ bugzoo bug build -f manybugs:php:2011-01-23-bc049ccb62-a6c0a4e474
building bug: manybugs:php:2011-01-23-bc049ccb62-a6c0a4e474
...
Step 12/22 : RUN cd scenario && rm -rf coverage* configuration-oracle local-root limit* php-tests-* *.cache *.debug.* *~ php.tar.gz && mv test.sh test.sh.orig && mv bug-failures bug-info && cp bugged-program.txt manifest.txt && mv *.lines bug-info && mv fix-failures bug-info && cd ../ && mv scenario/* /experiment && rm -rf scenario && sudo chown -R docker /experiment && grep -o -P '(?<=")[^"]+.phpt(?=")' php-run-tests.c > tests.all.txt && grep -o -P '\d+(?= &&)' test.sh.orig > tests.indices.txt && rm -f php-run-tests.c test.sh.orig && mv php src && cd src && make distclean &> /dev/null && rm -rf configure config.nice autom4te.cache aclocal.m4 php5.spec missing mkinstalldirs
---> Running in 74cb14e9a115
mv: will not create hard link '/experiment/fixed/ext' to directory '/experiment/diffs/ext'
mv: will not create hard link '/experiment/preprocessed/ext' to directory '/experiment/php/ext'
mv: will not create hard link '/experiment/sanity/ext' to directory '/experiment/php/.git'
docker@8ad1a643b29a:/experiment$ ./test.sh p4
basename: missing operand
Try 'basename --help' for more information.
./test.sh: line 5: [: =: unary operator expected
rewrite_tag.c:142:19: error: unknown type name 'uint64'
uint64 base_value )
^
rewrite_tag.c: In function 'main':
rewrite_tag.c:332:5: warning: implicit declaration of function 'rewrite_test' [-Wimplicit-function-declaration]
failure |= rewrite_test( "rewrite1.tif", 10, 0, 100 );
^
make: *** [rewrite_tag.o] Error 1
lt-.*: no process found
building bug: manybugs:lighttpd:1913-1914
Building image: squareslab/manybugs:base
Step 1/12 : FROM ubuntu:14.04
---> 2ff3b426bbaa
Step 2/12 : MAINTAINER Chris Timperley "[email protected]"
---> Using cache
---> 1640b372fd57
Step 3/12 : RUN apt-get update && apt-get install --no-install-recommends -y sudo && useradd -ms /bin/bash docker && echo 'docker ALL=(ALL) NOPASSWD:ALL' >> /etc/sudoers && adduser docker sudo && apt-get clean && mkdir -p /home/docker && sudo chown -R docker /home/docker && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
---> Using cache
---> fe6c78721856
Step 4/12 : USER docker
---> Using cache
---> 7c4a7a993dfa
Step 5/12 : RUN sudo chown -R docker /usr/local/bin
---> Using cache
---> df229f8c11e6
Step 6/12 : RUN sudo apt-get update && sudo apt-get install --no-install-recommends -y build-essential gcc patch curl libcap-dev git cmake vim jq tar psmisc moreutils wget zip unzip python3-setuptools python software-properties-common libncurses5-dev && sudo apt-get autoremove -y && sudo apt-get clean && sudo rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
---> Using cache
---> a8c3de49f196
Step 7/12 : RUN sudo rm /bin/sh && sudo ln -s /bin/bash /bin/sh
---> Using cache
---> 290c5b222cd4
Step 8/12 : RUN sudo mkdir -p /experiment && sudo chown -R docker /experiment
---> Using cache
---> 7346f3f7a4fd
Step 9/12 : WORKDIR /experiment
---> Using cache
---> e7580fca529e
Step 10/12 : ADD base/preprocess /experiment/preprocess
---> Using cache
---> 940cf19e2006
Step 11/12 : ADD compile.sh /experiment/compile.sh
---> Using cache
---> 0fb211ba3a47
Step 12/12 : RUN sudo chown -R docker /experiment && sudo chmod +x compile.sh
---> Using cache
---> 0409eaf9ce6c
Successfully built 0409eaf9ce6c
Successfully tagged squareslab/manybugs:base
Built image: squareslab/manybugs:base
Building image: squareslab/manybugs:lighttpd
Step 1/3 : FROM squareslab/manybugs:base
---> 0409eaf9ce6c
Step 2/3 : MAINTAINER Chris Timperley "[email protected]"
---> Using cache
---> c19c0c3cb914
Step 3/3 : RUN sudo apt-get update && sudo apt-get install --no-install-recommends -y subversion m4 libglib2.0-dev
---> Using cache
---> 2be49294a6b5
Successfully built 2be49294a6b5
Successfully tagged squareslab/manybugs:lighttpd
Built image: squareslab/manybugs:lighttpd
Building image: squareslab/manybugs:lighttpd-1913-1914
Step 1/14 : FROM squareslab/manybugs:lighttpd
---> 2be49294a6b5
Step 2/14 : ARG bug_commit
---> Using cache
---> e94a4ebc6cc3
Step 3/14 : ARG fix_commit
---> Using cache
---> f16987987561
Step 4/14 : ENV BUG_COMMIT ${bug_commit}
---> Using cache
---> 7a781b159857
Step 5/14 : ENV FIX_COMMIT ${fix_commit}
---> Using cache
---> 9e0858eb432d
Step 6/14 : ENV SCENARIO_NAME lighttpd-bug-${BUG_COMMIT}-${FIX_COMMIT}
---> Using cache
---> 264e0cd7413b
Step 7/14 : ENV OLD_LOCATION /root/mountpoint-genprog/genprog-many-bugs/${SCENARIO_NAME}
---> Using cache
---> a77366ac7729
Step 8/14 : RUN cd /experiment && wget -nv http://repairbenchmarks.cs.umass.edu/ManyBugs/scenarios/${SCENARIO_NAME}.tar.gz -O scenario.tar.gz && tar -xf scenario.tar.gz && mv ${SCENARIO_NAME} scenario && rm scenario.tar.gz && cd scenario && rm -rf coverage* configuration-oracle local-root limit* *.cache *.debug.* sanity compile.pl *~ test reconfigure preprocessed fixed-program.txt && mv bug-failures bug-info && mv bugged-program.txt manifest.txt && mv *.lines bug-info && mv fix-failures bug-info && mv lighttpd src && cd ../ && mv scenario/* /experiment && rm -rf scenario && cd /experiment && rm -rf tests && cd /experiment/src && make distclean && svn upgrade && svn revert $(cat /experiment/manifest.txt) && sudo chown -R docker /experiment
---> Using cache
---> 79c8ccb3d3f7
Step 9/14 : RUN sed -i "s#${OLD_LOCATION}#/experiment#g" test.sh && sed -i "s#cd gmp#cd src#g" test.sh && sed -i "s#/experiment/limit#timeout 5#g" test.sh && sed -i "s#/usr/bin/perl#perl#g" test.sh && sed -i 's#lt-\.\*#lt-\.\* \&\> /dev/null#g' test.sh && sed -i 's#cd lighttpd/tests#cd src/tests#g' test.sh
---> Using cache
---> 50261cc45408
Step 10/14 : RUN sed -i 's#image.JPG#image.jpg#g' src/tests/core-request.t
---> Using cache
---> 77fe128e4012
Step 11/14 : RUN cd src/tests/tmp/lighttpd/servers/www.example.org/pages && rm symlinked index.xhtml && ln -s expire symlinked && ln -s index.html index.xhtml
---> Using cache
---> 42113081dc7e
Step 12/14 : ADD mod-cgi.t /experiment/src/tests/mod-cgi.t
---> Using cache
---> 28dc420e092e
Step 13/14 : RUN ./preprocess && cd src && ./configure && make -j$(nproc)
---> Running in 79b91b02cf20
checking build system type...
x86_64-unknown-linux-gnu
checking host system type...
....
FAILS DURING COMPILATION
Traceback (most recent call last):
File "/home/afsoon/BugZoo/bin/bugzoo", line 9, in <module>
load_entry_point('bugzoo==1.1.4', 'console_scripts', 'bugzoo')()
File "/home/afsoon/BugZoo/bugzoo/cli.py", line 524, in main
args.func(args)
File "/home/afsoon/BugZoo/bugzoo/cli.py", line 486, in <lambda>
cmd.set_defaults(func=lambda args: build_bug(rbox, args.bug, args.force))
File "/home/afsoon/BugZoo/bugzoo/cli.py", line 94, in build_bug
bug.build(force=force)
File "/home/afsoon/BugZoo/bugzoo/bug.py", line 309, in build
self.__build_instructions.build(force=force, quiet=quiet)
File "/home/afsoon/BugZoo/bugzoo/build.py", line 230, in build
raise ImageBuildFailed(self.tag, log)
bugzoo.errors.ImageBuildFailed: squareslab/manybugs:lighttpd-1913-1914
Hi!
I am getting following syntax error while building Php scenarios.
Step 3/9 : RUN sudo apt-get update && sudo apt-get install -y --no-install-recommends autoconf libxml2-dev python psmisc && sudo apt-get clean && && sudo apt-get autoremove && && sudo rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
---> Running in 546a725e4a8a
/bin/sh: -c: line 0: syntax error near unexpected token &&' /bin/sh: -c: line 0: sudo apt-get update && sudo apt-get install -y --no-install-recommends autoconf libxml2-dev python psmisc && sudo apt-get clean && && sudo apt-get autoremove && && sudo rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*'
Please fix the docker file by removing duplicate && in lines 9-11.
https://github.com/squaresLab/ManyBugs/blob/master/php/Dockerfile
Having a hard time building gmp-14166-14167.
The error is
/usr/bin/ld: mpn/.libs/invert_limb.o: relocation R_X86_64_PC32 against protected symbol `__gmpn_invert_limb_table' can not be used when making a shared object
Tried the following solutions:
-fPIC flag to CFLAGS and CXXFLAGS in Makefile-no-pie flag to CFLAGS and CXXFLAGS in Makefile./configure --with-picand none of them worked.
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