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kegg_viewer's Introduction

Generate Highlighted SVG/PNG for KEGG Pathway

Installation

pip install kegg_viewer

Examples

kegg_viewer -h
kegg_viewer -p ko00196
kegg_viewer -p ko00196,ko00197
kegg_viewer -p path.list
kegg_viewer -p path.list -g gene.list -c ./cache -O output
kegg_viewer -p path.list -g gene.list -m online
kegg_viewer -p path.list -g gene.list -t png
kegg_viewer -p path.list -g gene.list -t both

genelist examples

K08913	red
K08912	blue
LAMA2	blue
K02289	red
K20713	blue
K08910	#FF1188

example results

png mode png svg mode svg

SVG Mode:

  • local # use local image as background
  • online # use online image as background
  • base64 # convert background to base64, default and recommend!

TODOs

  • add list, link method for KEGGRest
  • prepare cache data(png/conf) for input organism

kegg_viewer's People

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