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View Code? Open in Web Editor NEWgraphviz magic for jupyter notebook
License: GNU General Public License v3.0
graphviz magic for jupyter notebook
License: GNU General Public License v3.0
I'm not going to troubleshoot this since I have an alternative solution for my immediate needs, but just wanted to note that it didn't work out of the box for me.
%%dot -p
digraph {
node [color="${color}" style="${style}"]
a -> {b c}
}
Gave me this:
---------------------------------------------------------------------------
FileNotFoundError Traceback (most recent call last)
<ipython-input-83-7686923d6ccf> in <module>
----> 1 get_ipython().run_cell_magic('dot', '-p', 'digraph {\n node [color="${color}" style="${style}"]\n a -> {b c}\n}\n')
~/.pyenv/versions/3.8.6/envs/p3/lib/python3.8/site-packages/IPython/core/interactiveshell.py in run_cell_magic(self, magic_name, line, cell)
2379 with self.builtin_trap:
2380 args = (magic_arg_s, cell)
-> 2381 result = fn(*args, **kwargs)
2382 return result
2383
<decorator-gen-119> in dot(self, line, cell)
~/.pyenv/versions/3.8.6/envs/p3/lib/python3.8/site-packages/IPython/core/magic.py in <lambda>(f, *a, **k)
185 # but it's overkill for just that one bit of state.
186 def magic_deco(arg):
--> 187 call = lambda f, *a, **k: f(*a, **k)
188
189 if callable(arg):
~/.pyenv/versions/3.8.6/envs/p3/lib/python3.8/site-packages/dotmagic/dotmagic.py in dot(self, line, cell)
101 def dot(self, line, cell=None):
102 opts, line = self._do_args(line)
--> 103 return self._do_magic(opts, line, cell)
104
105 @line_magic
~/.pyenv/versions/3.8.6/envs/p3/lib/python3.8/site-packages/dotmagic/dotmagic.py in _do_magic(self, opts, line, cell)
88
89 if 'p' in opts:
---> 90 cmd = self._svg_to_png(cmd)
91 image_type = Image
92
~/.pyenv/versions/3.8.6/envs/p3/lib/python3.8/site-packages/dotmagic/dotmagic.py in _svg_to_png(self, s)
64 _, tmpf = tempfile.mkstemp(dir=self._tmpdir, suffix='.png')
65 cmd = ['inkscape', '-p', '-o', tmpf]
---> 66 return s.pipe(cmd, outfile=tmpf)
67
68 def _do_args(self, line):
~/.pyenv/versions/3.8.6/envs/p3/lib/python3.8/site-packages/dotmagic/dotmagic.py in pipe(self, cmd, outfile)
33
34 def pipe(self, cmd, outfile=None):
---> 35 return Cmd(cmd, self._proc.stdout, outfile=outfile)
36
37 def __or__(self, other):
~/.pyenv/versions/3.8.6/envs/p3/lib/python3.8/site-packages/dotmagic/dotmagic.py in __init__(self, cmd, stdin, stdout, stderr, outfile)
16
17 def __init__(self, cmd, stdin=PIPE, stdout=PIPE, stderr=None, outfile=None):
---> 18 self._proc = Popen(cmd, stdin=stdin, stdout=stdout, stderr=stderr)
19 self._outfile = outfile
20
~/.pyenv/versions/3.8.6/lib/python3.8/subprocess.py in __init__(self, args, bufsize, executable, stdin, stdout, stderr, preexec_fn, close_fds, shell, cwd, env, universal_newlines, startupinfo, creationflags, restore_signals, start_new_session, pass_fds, encoding, errors, text)
852 encoding=encoding, errors=errors)
853
--> 854 self._execute_child(args, executable, preexec_fn, close_fds,
855 pass_fds, cwd, env,
856 startupinfo, creationflags, shell,
~/.pyenv/versions/3.8.6/lib/python3.8/subprocess.py in _execute_child(self, args, executable, preexec_fn, close_fds, pass_fds, cwd, env, startupinfo, creationflags, shell, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, restore_signals, start_new_session)
1700 if errno_num != 0:
1701 err_msg = os.strerror(errno_num)
-> 1702 raise child_exception_type(errno_num, err_msg, err_filename)
1703 raise child_exception_type(err_msg)
1704
FileNotFoundError: [Errno 2] No such file or directory: 'inkscape'
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