Comments (3)
Just checking in on this... Has this been resolved?
from kinc.
No, it's not very high-priority right now. Parallel RNG is critical for something like running multiple simulations in parallel with different random seeds, but for KINC it's not necessary, just a nice thing to have. I'll get around to this when I have time to think about it.
from kinc.
Closing as this issue does not seem to be very important.
I just changed the serial code to use the exact same rand()
implementation as the CUDA/OpenCL code, so that the CPU and GPU produce the same results. Alternatively we can try other things like seeding the PRNG for each gene pair with the pairwise index or something like that. But right now it doesn't seem like pairwise GMMs are very sensitive to the random initialization.
from kinc.
Related Issues (20)
- Kinc 3D viewer requires that the first column of the amx be labled "Sample" HOT 4
- KINC 3D viewer mangles TTY HOT 1
- Idea to Speed Similarity GMM Step
- Hypergeometric test performs poorly for sub-categories. HOT 3
- Documentation should include uninstall command
- Would be nice if we had a way to see version of kinc
- Need consistency of what files are called HOT 2
- Clarification on --minexpr and --nan values HOT 1
- Consistency of --preout and --postout HOT 1
- Ask for visualization dependencies for KINC HOT 5
- Philosophical thought about the use of "Source" and "Target" labels HOT 4
- install issue
- Need a "version" command HOT 1
- Additional Space prior to every positive correlation value HOT 1
- Post processing with KINC.R changes formatting HOT 1
- KINC 3D viewer attempts to read in p_value as character string
- KINC 3D viewer can not read in non-csGCN KINC network
- Log file print line at start
- Palmetto install broken HOT 2
- How to extract KINC network with container?
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from kinc.