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lfp-data-analysis

lfpy

Python-module for calculation of extracellular potentials from multicompartment neuron models and networks

lost

Latent Oscillation in Spike Train (LOST)

mountainlab

spike sorting software

mountainlab-js

MountainLab is data processing, sharing and visualization software for scientists. It is built around MountainSort, spike sorting software, but is designed to be more generally applicable.

mtspec

Python library for multitaper spectral estimations

narayan-embc2015

narayan-orofacial

ner2015

NER 2015 with Narayan

netpyne

A python package to facilitate the development of biological neuronal networks in NEURON

network_visualization

RCC 2019 Spring Term Workshop on Introduction to Network Analysis and Visualization

neural-flows

Estimation, analysis and decomposition of brainwave spatiotemporal dynamics

neurofdptoolbox

MATLAB toolbox to automatically detect, analyze and visualize spatiotemporal fractional propagating patterns in neural population activity, developed by Dr. Pulin Gong's group at University of Sydney

probes

Repository of standard .prb files for different manufacturers.

processing-js

A port of the Processing visualization language to JavaScript.

pycircstat2

A rework of pycircstat

python-neo

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

scattertext

Beautiful visualizations of how language differs among document types.

scimlbook

Parallel Computing and Scientific Machine Learning (SciML): Methods and Applications (MIT 18.337J/6.338J)

spectrum

Spectral Analysis in Python

spyking-circus

Fast and scalable spike sorting in python

swiftspikenetwork

sysidentpy

A Python Package For System Identification Using NARMAX Models

tf-pac

Implementation of a phase amplitude coupling (PAC) measure based on a high resolution complex time-frequency distribution.

tsfresh

Automatic extraction of relevant features from time series:

tsne-cuda

GPU Accelerated t-SNE for CUDA with Python bindings

umap

Uniform Manifold Approximation and Projection

vega-lite

A concise grammar of interactive graphics, built on Vega.

vertexsimulator

Virtual Electrode Recording Tool for EXtracellular potentials: a Matlab simulator for spatially realistic LFP simulation in spiking neural networks

wave-matlab