Date: Jan 7 – May 6, 2019 Academic Year: 2018
| DATE | TIME | Format | Topic | Lecturer |
|---|---|---|---|---|
| 7/1/19 | 1-5pm | Lecture | Complex Genetic Diseases in the Population | BS |
| 14/1/19 | 1-3pm | Lecture | Study designs in epidemiology and genetics | BS |
| 14/1/19 | 3-5pm | Lab | Designing genetic studies | BS |
| 21/1/19 | 1-3pm | Lecture | Data management, data wrangling, EDA | DM |
| 21/1/19 | 3-5pm | Lab | Introduction to R | DM |
| 28/1/19 | 1-3pm | Lecture | Methods for high-throughput genotyping and sequencing | HG |
| 28/1/19 | 3-5pm | Lab | PLINK: HWE, Call rate, and QC | HG |
| 4/2/19 | 1-3pm | Lecture | Fundamentals in the analysis of genetic studies | BS |
| 4/2/19 | 3-5pm | Lab | Probability Reviews | BS |
| 11/2/19 | 8-10am | Lecture | Recombination and linkage analysis | JE |
| 11/2/19 | 10-12pm | Lab | Recombination and linkage analysis | JE |
| 18/2/19 | 1-3pm | Lecture | Linkage disequilibrium and LD mapping | BS |
| 18/2/19 | 3-5pm | Lab | Haploview, LDZoom | BS |
| 25/2/19 | 1-3pm | Lecture | Designs and analysis in quantitative trait genetics studies | PC |
| 25/2/19 | 3-5pm | Lab | T-test, ANNOVA, linear regression | PC |
| 4/3/19 | 1-3pm | Lecture | Designs and analysis of binary traits in genetics studies | PC |
| 4/3/19 | 3-5pm | Lab | Chi square, trend-test, logistic regression | PC |
| 11/3/19 | 8-10am | Lecture | Genome-wide association study | JE |
| 11/3/19 | 10-12pm | Lab | Analysis & Visualization | JE |
| 18/3/19 | 8-10am | Lecture | Confounders & Population Substructure | JE |
| 18/3/19 | 10-12pm | Lab | MDR and PCA | JE |
| 25/3/19 | 1-3pm | Lecture | Mendelian randomization & meta-analysis | PC |
| 25/3/19 | 3-5pm | Lab | Meta-analysis and MR 3-5pm | PC |
| 1/4/19 | 1-3pm | Lecture | Genetic studies using next-generation sequencing technology | HG |
| 1/4/19 | 3-5pm | Lab | Variant prioritization software | HG |
| 22/4/19 | 1-3pm | Lecture | Analysis of transcriptome data | VC |
| 22/4/19 | 3-5pm | Lab | Gene Expression Analysis | VC |
| 29/4/19 | 1-3pm | Lecture | Systems biology | VC |
| 29/4/19 | 3-5pm | Lab | Molecular Interaction & Network | VC |
| 13/5/19 | TBD | Lecture | Final exam |
- Attendance: 10%
- Homework: 60%
- Final Exam: 30%
- A > 90%
- B+ [80-90)
- B [70-80)
- C < 70%
Assistant professor Dr. Bhoom Suktitipat, MD, PhD
Graduate Program in Medical Bioinformatics
Department of Biochemistry, Faculty of Medicine Siriraj Hospital &
Integrative Computational BioScience Center, Mahidol University
- Dr. Dumrong Mairiant, PhD (Biotech, NSTDA)
- Dr. Harald Grove, PhD (Faculty of Medicine Siriraj Hospital, Mahidol University)
- Dr. Jakris Eu-ahsunthornwattana, MD, PhD (Faculty of Medicine Ramathibodi Hospital, Mahidol University)
- Dr. Pimphen Charoen, PhD (Faculty of Tropical Medicine, Mahidol University)
- Dr. Vardodom Charoensawan, PhD (Faculty of Science, Mahidol University)
- Laird NM, Lange C. The Fundamentals of Modern Statistical Genetics. Springer Science & Business Media; 2010. 226 p.
- Thomas DC. Statistical methods in genetic epidemiology. Oxford University Press; 2004. 458 p.
- Ziegler A, König IR. A statistical approach to genetic epidemiology: Concepts and Applications. John Wiley & Sons; 2010. 522 p.
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