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irods-rdm-hpc-course

Course about basic iRODS icommands in a data processing pipelines

irods-user-training

iRODS user training repository for KU Leuven projects

irods_training

irods_working_group_imaging

jupyter-ai

A generative AI extension for JupyterLab

label-free-prediction-of-cell-painting-from-brightfield-images

Label Free Prediction of Cell Painting from Brightfield Images

linux-for-hpc

Slides, exercises and extra files for the Linux for HPC course at KU Leuven

machine-learning-course-2days

machine_learning_complete

A comprehensive machine learning repository containing 30+ notebooks on different concepts, algorithms and techniques.

machinelearning_notes

Machine learning and deep learning resources

minibook-2nd-code

Code of the IPython Minibook, 2nd edition (2015)

miti

Minimum Information about Tissue Imaging

ml-course-vib-2021

ml-for-beginners

12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all

mlsummerschoolvienna2022

ESI-DCAFM-TACO-VDSP Summer School on "Machine Learning for Materials Hard and Soft"

nanopyx

Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging

napari-clemreg

An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)

napari-spot-detection-tutorial

A tutorial on performing spot detection using napari, scikit-image, and scipy

nd2

Yet another nd2 (Nikon NIS Elements) file reader for python. With outputs to numpy, dask, and xarray

nextflow-workshop

Nextflow workshop materials 27 May 2021

nlp_course

YSDA course in Natural Language Processing

ome-zarr-image-analysis-nextflow

Basic example of using OME-Zarr in a Nextflow pipeline

p2n_demo1

proteomicsml

Community-curated tutorials and datasets for ML in proteomics

python-mastery

Advanced Python Mastery (course by @dabeaz)

python_envs

This repository contains a collection of YML and/or requirments file and tricks to create Python Environments

python_for_microscopists

https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1

rl-baselines3-zoo

A training framework for Stable Baselines3 reinforcement learning agents, with hyperparameter optimization and pre-trained agents included.

segment-flow

Nextflow pipeline for deep learning segmentation models

simpleitk-notebooks

Jupyter notebooks for learning how to use SimpleITK