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 Top-DBS 1.0 
 Prediction of beta-strand pairs, beta-strand pairing direction, and beta-sheet topology
 
 Knowledge Engineering Research Group (KERG), Department of Computer Engineering,
 Faculty of Engineering, Ferdowsi University of Mashhad, Iran. 
 Home page: https://kerg.um.ac.ir/ ; Email: [email protected]
 
 Contact: 
 Toktam Dehghani
 Ph.D. Candidate and Researcher,
 Department of Computer Science and Software Engineering,
 Faculty of Engineering, Ferdowsi University of Mashhad, Iran.
 [email protected]    
 
 Copyright (C) 2018 Toktam Dehghani
 The program is free for scientific/academic use. 
 The software must not be further distributed without prior permission of the author.
 
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 Top-DBS can be downloaded from "http://kerg.um.ac.ir/"

 In order to run Top-DBS the following information must be provided:
 1. Secondary structure information (beta-strands and beta-residue)  
 2. A beta-residue contact score matrix 
 3. A beta-strand pairwise alignment matrix

 The program will provide in output the following information:
 1. Beta-strand pairs
 2. Beta-strand pairing direction
 3. Beta-sheet topology
 
 ***Examples files contained in the example folder.
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 Installation (Windows Version):
 1. Unzip Top-DBS.rar
 2. Input file:
    a Beta-strand pairwise alignment matrix [example\1nega\1nega.txt] 
 3. Build and Run Top-DBS.exe 
 4. Output file:
    Beta-sheet topology [example\1nega\1nega.out]
 ***Correct answer is provided in following address:
    [example\1nega\1nega.str]
 Enjoy it!
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For more information about file formats, please refer to README.txt
Contact: [email protected]