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probabilistic-programming-and-bayesian-methods-for-hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

pseqc

Resequencing QC Pipeline.

pseqcsampleshiny

resequencingQC

pseqcsiteshiny

Site quality control for resequencing experiments, using PSEQ and SHINY.

pycircos

PythonCircos

pyfasta

fast, memory-efficient, pythonic (and command-line) access to fasta sequence files

pyparallelshelljobs

Run commands in parallel on a local machine using python

python-novice-inflammation

Software Carpentry introduction to Python for novices using inflammation data.

python-packaging-user-guide

Python Packaging User Guide

python-syska

Python SYKA

python_introduction

pyvcf

A Variant Call Format reader for Python.

railsheroku

railstutorialheroku

rcomms

R composite multiple signals package

rehh

Optimization and Gap adding to REHH

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

selectionpipelinetestdata

Selection Pipeline Test Data.

settings

My Linux RC settings.

seurat

R toolkit for single cell genomics

shelllabbook

Lets you push command-line, things you run to a online server which stores and manages you bash lab book.

shunit2

Automatically exported from code.google.com/p/shunit2

single_cell_utilities

Single cell scripts and utilities

skat_utilities

Utilies for the SKAT R package, so you can adjust for covariates etc.

smartpointer

c++ smart pointers

sql-novice-survey

Software Carpentry introduction to SQL for novices.

sqlnovices

sql novices

sqltoday

ueuao

srbreak

stat435

stockfighter

Stockfighter API Python