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License: Other
HiFi error modeler and simulator with ploidy
License: Other
Thank you very much for creating HI.SIM. It works very well in most cases, but on one of my data sets, it crashes.
I get a floating point exception when using HImodel on a certain set of human hifi reads.
Below are the commands used to reproduce the error.
wget https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10382244/SRR10382244.1 -O SRR10382244.sra
wget https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR10382245/SRR10382245.1 -O SRR10382245.sra
fastq-dump --stdout --fasta default SRR10382244.sra > reads.fa
fastq-dump --stdout --fasta default SRR10382245.sra >> reads.fa
FastK -v -T1 -t1 -p -k51 reads.fa
HImodel -v -T56 -g5:1000 -e3 reads
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