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052020hackaton

achilles

Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database

acme-client

A Ruby client for the letsencrypt's ACME protocol.

amazing-planning-generator

Sharks gotta swim. Bats gotta fly. And I'll need a weekly planning till I die.

angular-transmart-analysis

arborist

TranSMART Arborist: Graphical tool for reshaping your data for the tranSMART data warehouse.

arraycgh-galaxy

ArrayCGH tools ported from Chipster to Galaxy

arvados

an open source platform for managing and analyzing biomedical big data

base-ui-component-seed

Angular JS plugin skeleton for a transmart UI.

biocypher

A unifying framework for biomedical research knowledge graphs

biocypher-cbioportal

a cBioPortal adapter for the BioCypher framework

biocypher-ot

blast2html

A command line tool + Galaxy plugin to convert blast XML output into a nicely readable html page

bluesteel

An Avro encoding/decoding library for Swift.

caciocavallo

headless Swing UI testing

cbioportal

cBioPortal topic branches at The Hyve

cbioportal-docker

A context to create cBioPortal docker images

cbioportal-frontend

React Frontend of cBioPortal :tada:

cbioportal-gsva-analysis

GSVA score and p-value calculation for TCGA studies in cBioPortal

cbioportal-session-service

cbioportal-staging

Staging app for automatically loading studies into cBioPortal

cbioportal-staging-portal

Staging web portal for loading studies into cBioPortal

cdmonboardingetl

R Package to support the onboarding process of new CDMs in the DARWIN EU Data Network

cellenics-releases

cellxgene_vip

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

charts

Curated applications for Kubernetes

cipherome_ukb.github.io

civic-server

Backend Server for CIViC Project

ckan

CKAN is an open-source DMS (data management system) for powering data hubs and data portals. CKAN makes it easy to publish, share and use data. It powers datahub.io, catalog.data.gov and europeandataportal.eu/data/en/dataset among many other sites.

ckanext-configpermission

A CKAN extension for managing permissions