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ohdsi-broadsea

Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.

ohdsi-broadsea-webtools

A Docker container that includes the OHDSI WebAPI (running in Apache Tomcat) and the OHDSI web applications.

ohdsi-commondatamodel

Definition and DDLs for the OMOP Common Data Model (CDM)

ohdsi-comparison-study

Test study for cohort level effect estimation

ohdsi-covid19-site

OHDSI COVID-19 studyathon website

ohdsi-dataprint

A Novel Visualization Tool for Database Comparison

ohdsi-dataqualitydashboard

A tool to help improve data quality standards in observational data science.

ohdsi-derivevariables

R package for deriving variables from the OMOP Common Data Model.

ohdsi-drug-mapping

Drug mapping script to map drugs to RxNorm drugs. Note that the data files are contained within the repository.

ohdsi-etl-abucasis

Transformation scripts for Inclivia's Abucasis EHR data | BigData@Heart consortium

ohdsi-etl-caliber

ETL scripts for caliber data

ohdsi-etl-prias

Transformation from PRIAS to the OMOP CDM

ohdsi-etl-sweden

ETL procedure to OMOP CDM for Swedish health data.

ohdsi-etl-synthea

Conversion from Synthea CSV to OMOP CDM

ohdsi-omop-pioneer

ohdsi-schemas

ohdsi-usagi

Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.

ohdsi-webapi

[Under development] OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

ohdsi-whiterabbit

WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.

omop-cdm

SQLAlchemy definition of the OMOP CDM

omop-queries

oncoprintjs

OncoPrint visualization

ontoma

Map your disease and phenotype terms to the Open Targets platform ontology

opal

OBiBa’s core database application for biobanks or epidemiological studies.

opal-rserver

Opal Rserver Debian meta package

open-clinica-data-uploader

Next version of Open Clinica Data Importer

openclinica

OpenClinica is the world's first commercial open source clinical trial software for Electronic Data Capture (EDC) Clinical Data Management (CDM).

opencpu

OpenCPU system for embedded scientific computation and reproducible research

opencpurscripts

produceUI

openphacts-java-client

OpenPHACTS API client library for Java