Tool for calculating the minimal coverage depth for a given variant allele frequency and probability of sequencing error.
- coverage_limit.py - TKinter based GUI.
- binom.py - library with functions for computing of minimal coverage and variant allele frequency.
- Needs SciPy package installed (https://www.scipy.org/install.html).
- To run: python coverage_limit.py
- Contains Python programming language and necessary libraries.
- Simple GUI in TKinter.
- http://homel.vsb.cz/~vas218/programs/OLGENCoverageLimit.msi
- Offers simple user interface accessible online.
- http://app.olgen.cz/clc/
- Additionally R script is provided with an example of R implementation of the statistical model.