tobypde / chianti Goto Github PK

running install
running build
running build_ext
building 'chianti' extension
x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/local/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c dataprovider.cpp -o build/temp.linux-x86_64-2.7/dataprovider.o -std=c++11 -fopenmp
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0,
from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from dataprovider.cpp:2:
/usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by "
^
In file included from dataprovider.cpp:5:0:
utils.h: In static member function ‘static std::string PythonUtils::objectToString(PyObject*)’:
utils.h:121:61: error: ‘PyUnicode_AsUTF8AndSize’ was not declared in this scope
return std::string(PyUnicode_AsUTF8AndSize(object, 0));
^
dataprovider.cpp: At global scope:
dataprovider.cpp:30:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
};
^
dataprovider.cpp:30:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
dataprovider.cpp:30:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
dataprovider.cpp:30:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
dataprovider.cpp: In function ‘int PyDataProvider_init(PyDataProvider*, PyObject*, PyObject*)’:
dataprovider.cpp:280:75: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
static char keywordList[] = {"iterator", "batchsize", "augmentors", 0};
^
dataprovider.cpp:280:75: warning: deprecated conversion from string constant to ‘char’ [-Wwrite-strings]
dataprovider.cpp:280:75: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
dataprovider.cpp: In function ‘PyObject* sequentialIterator(PyObject*, PyObject*, PyObject*)’:
dataprovider.cpp:447:45: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
static char keywordList[] = {"files", 0};
^
dataprovider.cpp: In function ‘PyObject randomIterator(PyObject*, PyObject*, PyObject*)’:
dataprovider.cpp:485:45: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
static char keywordList[] = {"files", 0};
^
dataprovider.cpp: In function ‘PyObject sampleIterator(PyObject*, PyObject*, PyObject*)’:
dataprovider.cpp:523:56: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
static char keywordList[] = {"files", "weights", 0};
^
dataprovider.cpp:523:56: warning: deprecated conversion from string constant to ‘char’ [-Wwrite-strings]
dataprovider.cpp: In function ‘PyObject* subsampleAugmentor(PyObject*, PyObject*, PyObject*)’:
dataprovider.cpp:568:46: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
static char keywordList[] = {"factor", 0};
^
dataprovider.cpp: In function ‘PyObject gammaAugmentor(PyObject*, PyObject*, PyObject*)’:
dataprovider.cpp:590:45: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
static char keywordList[] = {"gamma", 0};
^
dataprovider.cpp: In function ‘PyObject translationAugmentor(PyObject*, PyObject*, PyObject*)’:
dataprovider.cpp:612:46: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
static char keywordList[] = {"offset", 0};
^
dataprovider.cpp: In function ‘PyObject zoomingAugmentor(PyObject*, PyObject*, PyObject*)’:
dataprovider.cpp:634:45: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
static char *keywordList[] = {"range", 0};
^
dataprovider.cpp: At global scope:
dataprovider.cpp:679:27: error: variable ‘PyModuleDef chiantiModule’ has initializer but incomplete type
static struct PyModuleDef chiantiModule = {
^
dataprovider.cpp:680:9: error: ‘PyModuleDef_HEAD_INIT’ was not declared in this scope
PyModuleDef_HEAD_INIT,
^
In file included from /usr/include/c++/4.8/cstddef:42:0,
from /usr/local/include/opencv2/core/core.hpp:58,
from /usr/local/include/opencv2/opencv.hpp:47,
from chianti/common.h:3,
from chianti/provider.h:3,
from dataprovider.cpp:4:
dataprovider.cpp: In function ‘void PyInit_chianti()’:
dataprovider.cpp:699:16: error: return-statement with a value, in function returning 'void' [-fpermissive]
return NULL;
^
dataprovider.cpp:701:16: error: return-statement with a value, in function returning 'void' [-fpermissive]
return NULL;
^
dataprovider.cpp:703:16: error: return-statement with a value, in function returning 'void' [-fpermissive]
return NULL;
^
dataprovider.cpp:705:16: error: return-statement with a value, in function returning 'void' [-fpermissive]
return NULL;
^
dataprovider.cpp:707:39: error: ‘PyModule_Create’ was not declared in this scope
m = PyModule_Create(&chiantiModule);
^
In file included from /usr/include/c++/4.8/cstddef:42:0,
from /usr/local/include/opencv2/core/core.hpp:58,
from /usr/local/include/opencv2/opencv.hpp:47,
from chianti/common.h:3,
from chianti/provider.h:3,
from dataprovider.cpp:4:
dataprovider.cpp:709:16: error: return-statement with a value, in function returning 'void' [-fpermissive]
return NULL;
^
dataprovider.cpp:723:12: error: return-statement with a value, in function returning 'void' [-fpermissive]
return m;
^
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1

$ python setup.py install
running install
running build
running build_ext
building 'chianti' extension
creating build
creating build/temp.linux-x86_64-2.7
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -I/mnt/lustre/yangkunlin/pyuser/testpy/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c dataprovider.cpp -o build/temp.linux-x86_64-2.7/dataprovider.o -std=c++11 -fopenmp
In file included from dataprovider.cpp:7:0:
utils.h: In static member function ‘static std::string PythonUtils::objectToString(PyObject*)’:
utils.h:121:61: error: ‘PyUnicode_AsUTF8AndSize’ was not declared in this scope
return std::string(PyUnicode_AsUTF8AndSize(object, 0));
^
dataprovider.cpp: At global scope:
dataprovider.cpp:804:27: error: variable ‘PyModuleDef chiantiModule’ has initializer but incomplete type
static struct PyModuleDef chiantiModule = {
^
dataprovider.cpp:805:9: error: ‘PyModuleDef_HEAD_INIT’ was not declared in this scope
PyModuleDef_HEAD_INIT,
^
In file included from /usr/include/c++/4.8.2/cstddef:42:0,
from /usr/include/opencv2/core/core.hpp:58,
from /usr/include/opencv2/opencv.hpp:47,
from chianti/common.h:3,
from chianti/provider.h:3,
from dataprovider.cpp:6:
dataprovider.cpp: In function ‘void PyInit_chianti()’:
dataprovider.cpp:824:16: error: return-statement with a value, in function returning 'void' [-fpermissive]
return NULL;
^
dataprovider.cpp:826:16: error: return-statement with a value, in function returning 'void' [-fpermissive]
return NULL;
^
dataprovider.cpp:828:16: error: return-statement with a value, in function returning 'void' [-fpermissive]
return NULL;
^
dataprovider.cpp:830:16: error: return-statement with a value, in function returning 'void' [-fpermissive]
return NULL;
^
dataprovider.cpp:832:39: error: ‘PyModule_Create’ was not declared in this scope
m = PyModule_Create(&chiantiModule);
^
In file included from /usr/include/c++/4.8.2/cstddef:42:0,
from /usr/include/opencv2/core/core.hpp:58,
from /usr/include/opencv2/opencv.hpp:47,
from chianti/common.h:3,
from chianti/provider.h:3,
from dataprovider.cpp:6:
dataprovider.cpp:834:16: error: return-statement with a value, in function returning 'void' [-fpermissive]
return NULL;
^
dataprovider.cpp:848:12: error: return-statement with a value, in function returning 'void' [-fpermissive]
return m;
^
error: command 'gcc' failed with exit status 1

Collecting git+https://github.com/TobyPDE/chianti
Cloning https://github.com/TobyPDE/chianti to /tmp/pip-de3azgei-build
Installing collected packages: Chianti
Running setup.py install for Chianti ... error
Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-de3azgei-build/setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" install --record /tmp/pip-x9r7_3j4-record/install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_ext
building 'chianti' extension
creating build
creating build/temp.linux-x86_64-3.5
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c dataprovider.cpp -o build/temp.linux-x86_64-3.5/dataprovider.o -std=c++11 -fopenmp
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
In file included from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0,
from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from dataprovider.cpp:2:
/usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by "
^
In file included from dataprovider.cpp:4:0:
chianti/provider.h: In member function ‘void Chianti::TensorDataProvider::computeNextBatch()’:
chianti/provider.h:266:131: error: ‘isnan’ was not declared in this scope
if (isnan(imgs[i0 * imgsStrides[0] + _i1 * imgsStrides[1] + i2 * imgsStrides[2] + i3 * imgsStrides[3]])) {
^
chianti/provider.h:266:131: note: suggested alternative:
In file included from /usr/include/c++/5/random:38:0,
from /usr/include/c++/5/bits/stl_algo.h:66,
from /usr/include/c++/5/algorithm:62,
from /usr/local/include/opencv2/core/core.hpp:56,
from /usr/local/include/opencv2/opencv.hpp:47,
from chianti/common.h:3,
from chianti/provider.h:3,
from dataprovider.cpp:4:
/usr/include/c++/5/cmath:641:5: note: ‘std::isnan’
isnan(_Tp __x)
^
dataprovider.cpp: At global scope:
dataprovider.cpp:30:1: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
};
^
dataprovider.cpp:30:1: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
dataprovider.cpp:30:1: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
dataprovider.cpp:30:1: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
dataprovider.cpp: In function ‘int PyDataProvider_init(PyDataProvider*, PyObject*, PyObject*)’:
dataprovider.cpp:280:75: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
static char keywordList[] = {"iterator", "batchsize", "augmentors", 0};
^
dataprovider.cpp:280:75: warning: ISO C++ forbids converting a string constant to ‘char’ [-Wwrite-strings]
dataprovider.cpp:280:75: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
dataprovider.cpp: In function ‘PyObject* sequentialIterator(PyObject*, PyObject*, PyObject*)’:
dataprovider.cpp:447:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
static char keywordList[] = {"files", 0};
^
dataprovider.cpp: In function ‘PyObject randomIterator(PyObject*, PyObject*, PyObject*)’:
dataprovider.cpp:485:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
static char keywordList[] = {"files", 0};
^
dataprovider.cpp: In function ‘PyObject sampleIterator(PyObject*, PyObject*, PyObject*)’:
dataprovider.cpp:523:56: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
static char keywordList[] = {"files", "weights", 0};
^
dataprovider.cpp:523:56: warning: ISO C++ forbids converting a string constant to ‘char’ [-Wwrite-strings]
dataprovider.cpp: In function ‘PyObject* subsampleAugmentor(PyObject*, PyObject*, PyObject*)’:
dataprovider.cpp:568:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
static char keywordList[] = {"factor", 0};
^
dataprovider.cpp: In function ‘PyObject gammaAugmentor(PyObject*, PyObject*, PyObject*)’:
dataprovider.cpp:590:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
static char keywordList[] = {"gamma", 0};
^
dataprovider.cpp: In function ‘PyObject translationAugmentor(PyObject*, PyObject*, PyObject*)’:
dataprovider.cpp:612:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
static char keywordList[] = {"offset", 0};
^
dataprovider.cpp: In function ‘PyObject zoomingAugmentor(PyObject*, PyObject*, PyObject*)’:
dataprovider.cpp:634:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
static char *keywordList[] = {"range", 0};
^
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1

----------------------------------------

Command "/usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-de3azgei-build/setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" install --record /tmp/pip-x9r7_3j4-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-de3azgei-build/