A pilot project to extract medical indications (when a compound treats a disease) from the literature using Snorkel.

Snorkeling uses conda as a python package manager. Before moving on to the instructions below, please make sure to have it installed. Download conda here!!

Once everything has been installed, type following command in the terminal:

conda env create --file environment.yml

You can activate the environment by using the following command:

source activate snorkeling

Note: If you want to leave the environment, just enter the following command:

source deactivate 

Once the configuration has finished, use the following command below to run the project:

bash run.sh

If everything is successful, an internet browser should pop-up with a jupyter homepage.

This repository is dual licensed as BSD 3-Clause and CC0 1.0, meaning any repository content can be used under either license. This licensing arrangement ensures source code is available under an OSI-approved License, while non-code content — such as figures, data, and documentation — is maximally reusable under a public domain dedication.