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bcb-python-workshop-2018

Files for the basic python2 workshop taught on 3-23-2018

bcb570

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics

Useful bioinformatics scripts

chiptool

Java tool for visualisation of ChIP-seq data

covid-19-rna-seq-datasets

A repository for sharing information on available COVID-19 RNA-Seq datasets

covid-biorxiv

Flexible query for biorxiv and medRxiv COVID-19 collection

covid-dea

African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors that are associated with immunologic and infectious functions and environmental exposures

covid-quantification

A pipeline to quantify COVD-19 infected RNA-Seq samples

covid_rnaseq_workshop_2021

Hands on workshop for RNA-Seq analysis using pyrpipe, conda and snakemake

csvtoxl

Easily convert csv/tsv to excel (xlsx) taking care of gene names or other data vulnerable to auto conversion by MS-Excel

dmc2018

Prudsys 2018 Data Mining Cup

h2o-examples

Exploring machine learning libraries

hap.py

Haplotype VCF comparison tools

hello-julia

Trying out Julia language

human_orphan_genes

A pan-tissue pan-cancer compendium of human orphan genes

maize_pyrpipe

metaomgraph

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

microarraydataprocessing

mikado_compare_test

mikado_compare_test

mikado_test

Testing mikado tool

mog-debugging

Share MOG bugs here as the other repo is private

mogtutorial

Introduction to MOG

newgit

oldprojects

These are old projects.

orfipy

Fast and flexible ORF finder

oris

ORIS: An interactive software tool for prediction of replication origin in prokaryotic genomes

orphan-prediction

methods for orphan gene prediction paper optimization

phylostratr

An R framework for phylostratigraphy

plncpro

A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)