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MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

Home Page: http://metnetweb.gdcb.iastate.edu/MetNet_MetaOmGraph.htm

License: MIT License

Java 89.18% Makefile 10.78% R 0.05%

rna-seq big-data-visualization exploratory-data-analysis transcriptomics cancer-data bioinformatics mog

metaomgraph's Introduction

MetaOmGraph

MetaOmGraph (MOG) is a Java software to interactively explore and visualize large datasets. MOG overcomes the challenges posed by big size and complexity of big datasets by efficient handling of data files by using a combination of data indexing and buffering schemes. By incorporating metadata, MOG adds another dimension to the analyses and provides flexibility in data exploration. MOG allows users to explore their own data on their local machines. The user can save the progress at any stage of analysis to a MOG project file. Saved MOG projects can be shared, reused, and included in publications. MOG is user-centered software, designed for all types of data, but specialized for expression data. It combines the ability to analyze very large data sets in real time with metadata analysis, statistical analysis, list-making, and graphing capabilities.

Citation

Urminder Singh, Manhoi Hur, Karin Dorman, Eve Syrkin Wurtele, MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets, Nucleic Acids Research.

Examples

Line Chart

Box Plot

Scatter Plot

Volcano Plot

Histogram

Filtering Samples

Getting Started

Download executable from: http://metnetweb.gdcb.iastate.edu/MetNet_MetaOmGraph.htm

User guide is available at: https://github.com/urmi-21/MetaOmGraph/blob/master/manual/MOG_User_Guide.pdf

Prerequisites

Java Runtime Environment 8 (or higher)
R 3.4 (or higher) [optional]

Installing

MOG is freely available to download from http://metnetweb.gdcb.iastate.edu/MetNet_MetaOmGraph.htm. Click the download button, and then download the .zip file. Unzip the downloaded file to get a .jar file, this is the MOG program.

DOUBLE CLICK on the .jar file icon to start MOG.

Contributing

Please see CONTRIBUTING.md

Contributors

Current developers

Urminder Singh
Sumanth Kaliki
Kumara Sri Harsha

Initial developers

Manhoi Hur
Nick Ransom

Getting Help

If you encounter an error/bug, please report a minimal reproducible example on github. For questions and other discussion, please get in touch with the developers via github or email.

License

This project is licensed under the MIT License - see the LICENSE file for details

Some Java libraries MOG uses

References

If you use MetaOmGraph in your research, please cite the paper Urminder Singh, Manhoi Hur, Karin Dorman, Eve Syrkin Wurtele, MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets, Nucleic Acids Research.

If you use Mutual Information module in MetaOmGraph, please also cite Daub et al. Estimating mutual information using B-spline functions--an improved similarity measure for analysing gene expression data

metaomgraph's People

Contributors

Stargazers

Watchers

Forkers

eswlab chaitanyasunkara sumanthreddy542 vksriharsha ramakrishnaork zoomzoombloom murodin gitter-badger fahmirafie moonexpr avkermanov edson-github

metaomgraph's Issues

Implement a new tab to display results of DEA

Implement a new tab to display results of DEA, Differential correlation, etc.

Improve MOG tooltips

Is your feature request related to a problem? Please describe.
Many buttons and fields lack tooltip.

Describe the solution you'd like
Add tooltips to MOG interface objects.

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email:
Comments:
I tried to open a previous session. the default is logging set to permanently off. yet I seem to have choices of previous sessions.
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Mac OS X
Error log:

java.lang.NullPointerException
edu.iastate.metnet.metaomgraph.playback.PlaybackAction.playActions(PlaybackAction.java:58)
edu.iastate.metnet.metaomgraph.ui.ReproducibilityDashboardPanel$7.actionPerformed(ReproducibilityDashboardPanel.java:425)
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
java.awt.Component.processMouseEvent(Component.java:6539)
javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
java.awt.Component.processEvent(Component.java:6304)
java.awt.Container.processEvent(Container.java:2239)
java.awt.Component.dispatchEventImpl(Component.java:4889)
java.awt.Container.dispatchEventImpl(Container.java:2297)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
java.awt.Container.dispatchEventImpl(Container.java:2283)
java.awt.Window.dispatchEventImpl(Window.java:2746)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
java.awt.EventQueue.access$500(EventQueue.java:97)
java.awt.EventQueue$3.run(EventQueue.java:709)
java.awt.EventQueue$3.run(EventQueue.java:703)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
java.awt.EventQueue$4.run(EventQueue.java:733)
java.awt.EventQueue$4.run(EventQueue.java:731)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

Feature request: Preload the test dataset on the jar file and provide it as an option in the "Welcome to MetaOmGraph" window

From @aseetharam on February 9, 2018 15:1

Like the title says, it is useful to just play around without downloading anything other than the MOG jar file. I think it will be useful for getting started really quickly for beginners!

Copied from original issue: urmi-21/MOG-debugging#2

Improve interface to save plots; show file-type options

MOG can export charts as .png and .svg graphics. Write now interface relies on the user's provided file-type extension to choose the file-type. The interface should display the options to the user to choose the file type e.g. .png, .svg, .jpg.

Implement a taskbar to track MOG's internal windows

Many windows tend to hide behind others. Implement a taskbar to track MOG's internal windows.

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email:
Comments:
color chooser bug
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Windows 10
Error log:

java.lang.ClassCastException: edu.iastate.metnet.metaomgraph.ui.ColorChooseButton$1 cannot be cast to javax.swing.AbstractButton
javax.swing.plaf.basic.BasicButtonListener.stateChanged(BasicButtonListener.java:158)
edu.iastate.metnet.metaomgraph.ui.ColorChooseButton$1.actionPerformed(ColorChooseButton.java:46)
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
java.awt.Component.processMouseEvent(Component.java:6539)
javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
java.awt.Component.processEvent(Component.java:6304)
java.awt.Container.processEvent(Container.java:2239)
java.awt.Component.dispatchEventImpl(Component.java:4889)
java.awt.Container.dispatchEventImpl(Container.java:2297)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
java.awt.Container.dispatchEventImpl(Container.java:2283)
java.awt.Window.dispatchEventImpl(Window.java:2746)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
java.awt.EventQueue.access$500(EventQueue.java:97)
java.awt.EventQueue$3.run(EventQueue.java:709)
java.awt.EventQueue$3.run(EventQueue.java:703)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
java.awt.EventQueue$4.run(EventQueue.java:733)
java.awt.EventQueue$4.run(EventQueue.java:731)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

MOG will not export more than 250 columns to xls.

MOG will not export more than 250 columns to xls from the import to xls box on the line chart

. (250 used to be the column limit for xls >10 years ago when this was implemented, but it is far greater now.)

allow to check for the latest version

From @urmi-21 on October 27, 2018 23:31

Let MOG check for the latest version and update if required.

Copied from original issue: urmi-21/MOG-debugging#16

Implement heatmap visualisation

Heatmaps are great for visualizing gene expression datasets. MOG doesn't have interactive heatmaps yet.

MOG can't handle files which don't follow the required format.

From @urmi-21 on February 9, 2018 22:28

MOG will crash when a file is in weired format. e.g. load a non-tab delimited file in the metadata as a metadata file. Need to handle these exceptions.

Copied from original issue: urmi-21/MOG-debugging#3

add "NOT" as user option to search and selection functions.

add "NOT" as user option to search and selection functions.

shared project

When a project is shared, it does not open automatically. rather, as a user, I am asked to find the correct data and metadata txt files. When this happens, correct files are greyed out.

If I select "see all files", then then can see and chose correct data and metadata files, and make the project. But a first time user would not know that.

filter didn't work in linux

From @lijing28101 on February 27, 2018 21:33

The filter function for metadata didn't work in linux

Copied from original issue: urmi-21/MOG-debugging#7

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email:
Comments:
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Windows 10
Error log:

java.lang.NullPointerException
edu.iastate.metnet.metaomgraph.ui.MetadataTableDisplayPanel.updateTable(MetadataTableDisplayPanel.java:1595)
edu.iastate.metnet.metaomgraph.ui.MetaOmTablePanel.addExtInfoTab(MetaOmTablePanel.java:2329)
edu.iastate.metnet.metaomgraph.ui.MetaOmTablePanel.<init>(MetaOmTablePanel.java:676)
edu.iastate.metnet.metaomgraph.MetaOmGraph.projectOpened(MetaOmGraph.java:1867)
edu.iastate.metnet.metaomgraph.MetaOmGraph.access$2(MetaOmGraph.java:1856)
edu.iastate.metnet.metaomgraph.MetaOmGraph$OpenProjectWorker.finished(MetaOmGraph.java:2339)
edu.iastate.metnet.metaomgraph.AnimatedSwingWorker$1.run(AnimatedSwingWorker.java:93)
java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
java.base/java.security.AccessController.doPrivileged(AccessController.java:389)
java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:117)
java.desktop/java.awt.WaitDispatchSupport$2.run(WaitDispatchSupport.java:190)
java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
java.base/java.security.AccessController.doPrivileged(AccessController.java:389)
java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)

Error shown after Sample metadata table is filtered/updated

Occasionally this error message is shown after the sample metadata table is updated. It is harmless, after closing error dialog things seem normal.

Describe the dataset used
The human dataset from here: http://metnetweb.gdcb.iastate.edu/MetNet_MetaOmGraph.htm

To Reproduce
Steps to reproduce the behavior:

Go to sample metadata table
Click on Edit->Filter rows
Perform query
See error

Expected behavior
After the search, the metadata table should be updated and display the retained rows.

Desktop (please complete the following information):

OS: Windows10
Java version: 1.8
Total available memory: 8GB
CPU and number of cores: Intel i5/4 cores

MOG Error Report

java.lang.ArrayIndexOutOfBoundsException: 4 >= 4 java.base/java.util.Vector.elementAt(Vector.java:463) java.desktop/javax.swing.table.DefaultTableColumnModel.getColumn(DefaultTableColumnModel.java:295) java.desktop/javax.swing.plaf.basic.BasicTableHeaderUI.paint(BasicTableHeaderUI.java:671) java.desktop/javax.swing.plaf.ComponentUI.update(ComponentUI.java:161) java.desktop/javax.swing.JComponent.paintComponent(JComponent.java:797) java.desktop/javax.swing.JComponent.paint(JComponent.java:1074) java.desktop/javax.swing.JComponent.paintToOffscreen(JComponent.java:5255) java.desktop/javax.swing.RepaintManager$PaintManager.paintDoubleBufferedImpl(RepaintManager.java:1643) java.desktop/javax.swing.RepaintManager$PaintManager.paintDoubleBuffered(RepaintManager.java:1618) java.desktop/javax.swing.RepaintManager$PaintManager.paint(RepaintManager.java:1556) java.desktop/javax.swing.RepaintManager.paint(RepaintManager.java:1323) java.desktop/javax.swing.JComponent._paintImmediately(JComponent.java:5203) java.desktop/javax.swing.JComponent.paintImmediately(JComponent.java:5013) java.desktop/javax.swing.RepaintManager$4.run(RepaintManager.java:865) java.desktop/javax.swing.RepaintManager$4.run(RepaintManager.java:848) java.base/java.security.AccessController.doPrivileged(AccessController.java:391) java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85) java.desktop/javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:848) java.desktop/javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:823) java.desktop/javax.swing.RepaintManager.prePaintDirtyRegions(RepaintManager.java:772) java.desktop/javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1884) java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313) java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770) java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721) java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715) java.base/java.security.AccessController.doPrivileged(AccessController.java:391) java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85) java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740) java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203) java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124) java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:117) java.desktop/java.awt.WaitDispatchSupport$2.run(WaitDispatchSupport.java:190) java.desktop/java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:235) java.desktop/java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:233) java.base/java.security.AccessController.doPrivileged(AccessController.java:312) java.desktop/java.awt.WaitDispatchSupport.enter(WaitDispatchSupport.java:233) java.desktop/java.awt.Dialog.show(Dialog.java:1070) java.desktop/java.awt.Component.show(Component.java:1716) java.desktop/java.awt.Component.setVisible(Component.java:1663) java.desktop/java.awt.Window.setVisible(Window.java:1021) java.desktop/java.awt.Dialog.setVisible(Dialog.java:1005) edu.iastate.metnet.metaomgraph.AnimatedSwingWorker.start(AnimatedSwingWorker.java:166) edu.iastate.metnet.metaomgraph.ui.MetadataTableDisplayPanel.updateTable(MetadataTableDisplayPanel.java:1203) edu.iastate.metnet.metaomgraph.ui.MetadataTableDisplayPanel.updateTable(MetadataTableDisplayPanel.java:1126) edu.iastate.metnet.metaomgraph.ui.MetaOmTablePanel.updateMetadataTable(MetaOmTablePanel.java:3781) edu.iastate.metnet.metaomgraph.ui.MetadataTreeDisplayPanel.updateTree(MetadataTreeDisplayPanel.java:666) edu.iastate.metnet.metaomgraph.ui.MetaOmTablePanel.updateMetadataTree(MetaOmTablePanel.java:3788) edu.iastate.metnet.metaomgraph.ui.MetadataFilter$2.actionPerformed(MetadataFilter.java:170) java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1967) java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2308) java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:405) java.desktop/javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:262) java.desktop/javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:279) java.desktop/java.awt.Component.processMouseEvent(Component.java:6636) java.desktop/javax.swing.JComponent.processMouseEvent(JComponent.java:3342) java.desktop/java.awt.Component.processEvent(Component.java:6401) java.desktop/java.awt.Container.processEvent(Container.java:2263) java.desktop/java.awt.Component.dispatchEventImpl(Component.java:5012) java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2321) java.desktop/java.awt.Component.dispatchEvent(Component.java:4844) java.desktop/java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4918) java.desktop/java.awt.LightweightDispatcher.processMouseEvent(Container.java:4547) java.desktop/java.awt.LightweightDispatcher.dispatchEvent(Container.java:4488) java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2307) java.desktop/java.awt.Window.dispatchEventImpl(Window.java:2762) java.desktop/java.awt.Component.dispatchEvent(Component.java:4844) java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:772) java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721) java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715) java.base/java.security.AccessController.doPrivileged(AccessController.java:391) java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85) java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:95) java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745) java.desktop/java.awt.EventQueue$5.run(EventQueue.java:743) java.base/java.security.AccessController.doPrivileged(AccessController.java:391) java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85) java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:742) java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203) java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124) java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113) java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109) java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email:
Comments:
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Mac OS X
Error log:

java.lang.ClassCastException: java.lang.String cannot be cast to edu.iastate.metnet.metaomgraph.playback.LoggingTreeNode
edu.iastate.metnet.metaomgraph.playback.PlaybackAction.playActions(PlaybackAction.java:61)
edu.iastate.metnet.metaomgraph.ui.ReproducibilityDashboardPanel$7.actionPerformed(ReproducibilityDashboardPanel.java:425)
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
java.awt.Component.processMouseEvent(Component.java:6539)
javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
java.awt.Component.processEvent(Component.java:6304)
java.awt.Container.processEvent(Container.java:2239)
java.awt.Component.dispatchEventImpl(Component.java:4889)
java.awt.Container.dispatchEventImpl(Container.java:2297)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
java.awt.Container.dispatchEventImpl(Container.java:2283)
java.awt.Window.dispatchEventImpl(Window.java:2746)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
java.awt.EventQueue.access$500(EventQueue.java:97)
java.awt.EventQueue$3.run(EventQueue.java:709)
java.awt.EventQueue$3.run(EventQueue.java:703)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
java.awt.EventQueue$4.run(EventQueue.java:733)
java.awt.EventQueue$4.run(EventQueue.java:731)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email: urmi-21
Comments:
Cosine similarity histogram from matrix table
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Windows 10
Error log:

java.lang.IllegalArgumentException: Identifier not found
javax.swing.table.DefaultTableColumnModel.getColumnIndex(DefaultTableColumnModel.java:282)
javax.swing.JTable.getColumn(JTable.java:2564)
edu.iastate.metnet.metaomgraph.ui.SimilarityDisplayFrame$5.actionPerformed(SimilarityDisplayFrame.java:132)
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
javax.swing.AbstractButton.doClick(AbstractButton.java:376)
javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:842)
javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:886)
java.awt.Component.processMouseEvent(Component.java:6539)
javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
java.awt.Component.processEvent(Component.java:6304)
java.awt.Container.processEvent(Container.java:2239)
java.awt.Component.dispatchEventImpl(Component.java:4889)
java.awt.Container.dispatchEventImpl(Container.java:2297)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
java.awt.Container.dispatchEventImpl(Container.java:2283)
java.awt.Window.dispatchEventImpl(Window.java:2746)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
java.awt.EventQueue.access$500(EventQueue.java:97)
java.awt.EventQueue$3.run(EventQueue.java:709)
java.awt.EventQueue$3.run(EventQueue.java:703)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
java.awt.EventQueue$4.run(EventQueue.java:733)
java.awt.EventQueue$4.run(EventQueue.java:731)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email:
Comments: I chnaged themes a couple times, then changed color properties, then reverted to blue color theme. then I clicked "color" tab at bottom left. this is result
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Mac OS X
Error log:

java.lang.NullPointerException
edu.iastate.metnet.metaomgraph.ui.TaskbarPanel$1.actionPerformed(TaskbarPanel.java:211)
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
javax.swing.AbstractButton.doClick(AbstractButton.java:376)
javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:842)
com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157)
javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:886)
java.awt.Component.processMouseEvent(Component.java:6539)
javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
java.awt.Component.processEvent(Component.java:6304)
java.awt.Container.processEvent(Container.java:2239)
java.awt.Component.dispatchEventImpl(Component.java:4889)
java.awt.Container.dispatchEventImpl(Container.java:2297)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
java.awt.Container.dispatchEventImpl(Container.java:2283)
java.awt.Window.dispatchEventImpl(Window.java:2746)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
java.awt.EventQueue.access$500(EventQueue.java:97)
java.awt.EventQueue$3.run(EventQueue.java:709)
java.awt.EventQueue$3.run(EventQueue.java:703)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
java.awt.EventQueue$4.run(EventQueue.java:733)
java.awt.EventQueue$4.run(EventQueue.java:731)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

Add density histogram

Is your feature request related to a problem? Please describe.
Currently, the histogram plot shows the frequency of data. There should be an option to create normalized by sum histogram that would correspond to density.

Describe the solution you'd like
Add an option to the histogram plot to normalize histogram by total count.

quitting MOG

Every place that says "Quit MOG" should actually function.

allow to check for the latest version

From @urmi-21 on October 27, 2018 23:31

Let MOG check for the latest version and update if required.

Copied from original issue: urmi-21/MOG-debugging#16

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email:
Comments:
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Mac OS X
Error log:

java.lang.NullPointerException: No last correlation to save
edu.iastate.metnet.metaomgraph.ui.MetaOmTablePanel.keepLastCorrelation(MetaOmTablePanel.java:5331)
edu.iastate.metnet.metaomgraph.ui.MetaOmTablePanel.actionPerformed(MetaOmTablePanel.java:4263)
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
javax.swing.AbstractButton.doClick(AbstractButton.java:376)
javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:842)
javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:886)
java.awt.Component.processMouseEvent(Component.java:6539)
javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
java.awt.Component.processEvent(Component.java:6304)
java.awt.Container.processEvent(Container.java:2239)
java.awt.Component.dispatchEventImpl(Component.java:4889)
java.awt.Container.dispatchEventImpl(Container.java:2297)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
java.awt.Container.dispatchEventImpl(Container.java:2283)
java.awt.Window.dispatchEventImpl(Window.java:2746)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
java.awt.EventQueue.access$500(EventQueue.java:97)
java.awt.EventQueue$3.run(EventQueue.java:709)
java.awt.EventQueue$3.run(EventQueue.java:703)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
java.awt.EventQueue$4.run(EventQueue.java:733)
java.awt.EventQueue$4.run(EventQueue.java:731)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

Add a button to close the Import Meta Data frame after data is imported.

Implement the same for all the frames changed as part of issue #23

Enable hypothesis testing in boxplot charts

When two or more features are plotted as boxplot, perform hypothesis test on the distribution and display the results in the box plot. User can choose U test or t test. For more than two categories perform anova.

Re-implent MOG error reporting

From @urmi-21 on February 9, 2018 22:30

The code which is responsible for sending out emails should be encrypted.

Copied from original issue: urmi-21/MOG-debugging#4

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email:
Comments:
for testing
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Windows 10
Error log:

java.lang.NullPointerException
edu.iastate.metnet.metaomgraph.ui.MetadataTableDisplayPanel.updateTable(MetadataTableDisplayPanel.java:1595)
edu.iastate.metnet.metaomgraph.ui.MetaOmTablePanel.addExtInfoTab(MetaOmTablePanel.java:2329)
edu.iastate.metnet.metaomgraph.ui.MetaOmTablePanel.<init>(MetaOmTablePanel.java:676)
edu.iastate.metnet.metaomgraph.MetaOmGraph.projectOpened(MetaOmGraph.java:1867)
edu.iastate.metnet.metaomgraph.MetaOmGraph.access$2(MetaOmGraph.java:1856)
edu.iastate.metnet.metaomgraph.MetaOmGraph$OpenProjectWorker.finished(MetaOmGraph.java:2339)
edu.iastate.metnet.metaomgraph.AnimatedSwingWorker$1.run(AnimatedSwingWorker.java:93)
java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
java.base/java.security.AccessController.doPrivileged(AccessController.java:389)
java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:117)
java.desktop/java.awt.WaitDispatchSupport$2.run(WaitDispatchSupport.java:190)
java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
java.base/java.security.AccessController.doPrivileged(AccessController.java:389)
java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)

sorting problem in project data and chart

From @lijing28101 on June 29, 2018 15:37

When sorting in project data, it cannot distinguish the number and string.
Hope to add a function to sort the x-axis name in the chart.

Copied from original issue: urmi-21/MOG-debugging#14

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email:
Comments:
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Mac OS X
Error log:

java.lang.NullPointerException
edu.iastate.metnet.metaomgraph.MetaOmProject.getAllDefaultRowNames(MetaOmProject.java:2409)
edu.iastate.metnet.metaomgraph.MetaOmProject.getRowIndexbyName(MetaOmProject.java:2347)
edu.iastate.metnet.metaomgraph.ui.StripedTable.getToolTipText(StripedTable.java:75)
javax.swing.ToolTipManager$insideTimerAction.actionPerformed(ToolTipManager.java:675)
javax.swing.Timer.fireActionPerformed(Timer.java:313)
javax.swing.Timer$DoPostEvent.run(Timer.java:245)
java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
java.awt.EventQueue.access$500(EventQueue.java:97)
java.awt.EventQueue$3.run(EventQueue.java:709)
java.awt.EventQueue$3.run(EventQueue.java:703)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

Clicking the external web applications button in line chart crashes the window

Clicking the external web applications button in line chart crashes the window.

Implement import metadata window as an internal frame

Is your feature request related to a problem? Please describe.
Importing metadata into a project opens a new window outside of MOG. It would be better if it opes a new internal frame.
This also goes for editing samples window from Edit-->Manage samples.

Describe the solution you'd like
Reimplement import metadata window to be an internal frame.

Add sorting options for box plot

Is your feature request related to a problem? Please describe.
Add sorting options to box plot. E.g. sort by median value, sort by groups, etc.

Describe the solution you'd like
Implement an interface to allow the sorting of boxplots. Currently, a triple-click allows reordering the box plot but an automated sorting method is needed.

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email:
Comments:
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Windows 10
Error log:

java.lang.NullPointerException
edu.iastate.metnet.metaomgraph.ui.MetadataTableDisplayPanel.updateTable(MetadataTableDisplayPanel.java:1595)
edu.iastate.metnet.metaomgraph.ui.MetaOmTablePanel.addExtInfoTab(MetaOmTablePanel.java:2329)
edu.iastate.metnet.metaomgraph.ui.MetaOmTablePanel.<init>(MetaOmTablePanel.java:676)
edu.iastate.metnet.metaomgraph.MetaOmGraph.projectOpened(MetaOmGraph.java:1867)
edu.iastate.metnet.metaomgraph.MetaOmGraph.access$2(MetaOmGraph.java:1856)
edu.iastate.metnet.metaomgraph.MetaOmGraph$OpenProjectWorker.finished(MetaOmGraph.java:2339)
edu.iastate.metnet.metaomgraph.AnimatedSwingWorker$1.run(AnimatedSwingWorker.java:93)
java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
java.base/java.security.AccessController.doPrivileged(AccessController.java:389)
java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:117)
java.desktop/java.awt.WaitDispatchSupport$2.run(WaitDispatchSupport.java:190)
java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
java.base/java.security.AccessController.doPrivileged(AccessController.java:389)
java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email:
Comments:
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Mac OS X
Error log:

java.lang.NullPointerException
edu.iastate.metnet.metaomgraph.MetaOmProject.getAllDefaultRowNames(MetaOmProject.java:2409)
edu.iastate.metnet.metaomgraph.MetaOmProject.getRowIndexbyName(MetaOmProject.java:2347)
edu.iastate.metnet.metaomgraph.ui.StripedTable.getToolTipText(StripedTable.java:75)
javax.swing.ToolTipManager$insideTimerAction.actionPerformed(ToolTipManager.java:675)
javax.swing.Timer.fireActionPerformed(Timer.java:313)
javax.swing.Timer$DoPostEvent.run(Timer.java:245)
java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
java.awt.EventQueue.access$500(EventQueue.java:97)
java.awt.EventQueue$3.run(EventQueue.java:709)
java.awt.EventQueue$3.run(EventQueue.java:703)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

Cannot open the most recent project directly (clear unwanted recent projects)

From @lijing28101 on February 12, 2018 19:5

In linux, when open MOG, and the mouse cannot click on the most two recent project under "Open an existing project". The mouse is always flash.

Copied from original issue: urmi-21/MOG-debugging#5

Mog doesn't update the sample meta data table when editing metadata structure.

Subsets/lists for samples

MOG can search and subset the samples but there should be a way to store the subset lists and switch to the selected subset with just a click, just like feature lists.

Crash reported from user

MetaOmGraph Error:
Email: [email protected]
Comments:
This is a test exception generated by MOG
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Windows 10
Error log:

java.lang.ArithmeticException: / by zero
edu.iastate.metnet.metaomgraph.ui.MetaOmTablePanel.makeBoxPlot(MetaOmTablePanel.java:1429)
edu.iastate.metnet.metaomgraph.ui.MetaOmTablePanel.actionPerformed(MetaOmTablePanel.java:2572)
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
javax.swing.AbstractButton.doClick(AbstractButton.java:376)
javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:842)
javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:886)
java.awt.Component.processMouseEvent(Component.java:6539)
javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
java.awt.Component.processEvent(Component.java:6304)
java.awt.Container.processEvent(Container.java:2239)
java.awt.Component.dispatchEventImpl(Component.java:4889)
java.awt.Container.dispatchEventImpl(Container.java:2297)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
java.awt.Container.dispatchEventImpl(Container.java:2283)
java.awt.Window.dispatchEventImpl(Window.java:2746)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
java.awt.EventQueue.access$500(EventQueue.java:97)
java.awt.EventQueue$3.run(EventQueue.java:709)
java.awt.EventQueue$3.run(EventQueue.java:703)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
java.awt.EventQueue$4.run(EventQueue.java:733)
java.awt.EventQueue$4.run(EventQueue.java:731)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

allow to check for the latest version

From @urmi-21 on October 27, 2018 23:31

Let MOG check for the latest version and update if required.

Copied from original issue: urmi-21/MOG-debugging#16

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email:
Comments:
here, I clicked on the star.
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Mac OS X
Error log:

java.lang.ClassCastException: java.lang.String cannot be cast to edu.iastate.metnet.metaomgraph.playback.LoggingTreeNode
edu.iastate.metnet.metaomgraph.ui.ReproducibilityDashboardPanel.markActionsAsFavorite(ReproducibilityDashboardPanel.java:1054)
edu.iastate.metnet.metaomgraph.ui.ReproducibilityDashboardPanel$8.actionPerformed(ReproducibilityDashboardPanel.java:447)
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
java.awt.Component.processMouseEvent(Component.java:6539)
javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
java.awt.Component.processEvent(Component.java:6304)
java.awt.Container.processEvent(Container.java:2239)
java.awt.Component.dispatchEventImpl(Component.java:4889)
java.awt.Container.dispatchEventImpl(Container.java:2297)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
java.awt.Container.dispatchEventImpl(Container.java:2283)
java.awt.Window.dispatchEventImpl(Window.java:2746)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
java.awt.EventQueue.access$500(EventQueue.java:97)
java.awt.EventQueue$3.run(EventQueue.java:709)
java.awt.EventQueue$3.run(EventQueue.java:703)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
java.awt.EventQueue$4.run(EventQueue.java:733)
java.awt.EventQueue$4.run(EventQueue.java:731)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

Previous issues

Previous issues are listed here
https://github.com/urmi-21/MOG-debugging/issues

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email:
Comments:
Testing token, Ignore this
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Windows 10
Error log:

java.lang.NullPointerException
edu.iastate.metnet.metaomgraph.ui.MetadataTableDisplayPanel.actionPerformed(MetadataTableDisplayPanel.java:2479)
java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1967)
java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2308)
java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:405)
java.desktop/javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:262)
java.desktop/javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:279)
java.desktop/java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:297)
java.desktop/java.awt.Component.processMouseEvent(Component.java:6632)
java.desktop/javax.swing.JComponent.processMouseEvent(JComponent.java:3342)
java.desktop/java.awt.Component.processEvent(Component.java:6397)
java.desktop/java.awt.Container.processEvent(Container.java:2263)
java.desktop/java.awt.Component.dispatchEventImpl(Component.java:5008)
java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2321)
java.desktop/java.awt.Component.dispatchEvent(Component.java:4840)
java.desktop/java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4918)
java.desktop/java.awt.LightweightDispatcher.processMouseEvent(Container.java:4547)
java.desktop/java.awt.LightweightDispatcher.dispatchEvent(Container.java:4488)
java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2307)
java.desktop/java.awt.Window.dispatchEventImpl(Window.java:2762)
java.desktop/java.awt.Component.dispatchEvent(Component.java:4840)
java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:772)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
java.base/java.security.AccessController.doPrivileged(AccessController.java:389)
java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:95)
java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
java.desktop/java.awt.EventQueue$5.run(EventQueue.java:743)
java.base/java.security.AccessController.doPrivileged(AccessController.java:389)
java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:742)
java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email:
Comments:
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Windows 10
Error log:

java.lang.NullPointerException
edu.iastate.metnet.metaomgraph.ui.MetadataTableDisplayPanel.actionPerformed(MetadataTableDisplayPanel.java:2479)
java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1967)
java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2308)
java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:405)
java.desktop/javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:262)
java.desktop/javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:279)
java.desktop/java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:297)
java.desktop/java.awt.Component.processMouseEvent(Component.java:6632)
java.desktop/javax.swing.JComponent.processMouseEvent(JComponent.java:3342)
java.desktop/java.awt.Component.processEvent(Component.java:6397)
java.desktop/java.awt.Container.processEvent(Container.java:2263)
java.desktop/java.awt.Component.dispatchEventImpl(Component.java:5008)
java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2321)
java.desktop/java.awt.Component.dispatchEvent(Component.java:4840)
java.desktop/java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4918)
java.desktop/java.awt.LightweightDispatcher.processMouseEvent(Container.java:4547)
java.desktop/java.awt.LightweightDispatcher.dispatchEvent(Container.java:4488)
java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2307)
java.desktop/java.awt.Window.dispatchEventImpl(Window.java:2762)
java.desktop/java.awt.Component.dispatchEvent(Component.java:4840)
java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:772)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
java.base/java.security.AccessController.doPrivileged(AccessController.java:389)
java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:95)
java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
java.desktop/java.awt.EventQueue$5.run(EventQueue.java:743)
java.base/java.security.AccessController.doPrivileged(AccessController.java:389)
java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:742)
java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)

often wont sort columns, select lines, even though I click

From @evewurtele on August 6, 2018 19:47

often won't sort columns - this is new issue.
I am using the human dat, regular file.

With any dataset, in the graph view, it is hard to get MOG to change a line to make it thicker, or sometimes to change the color of the line.

I piut these together because they may be related.

Copied from original issue: urmi-21/MOG-debugging#15

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email:
Comments:
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Windows 10
Error log:

java.lang.NullPointerException
edu.iastate.metnet.metaomgraph.ui.MetadataTableDisplayPanel.updateTable(MetadataTableDisplayPanel.java:1595)
edu.iastate.metnet.metaomgraph.ui.MetaOmTablePanel.addExtInfoTab(MetaOmTablePanel.java:2329)
edu.iastate.metnet.metaomgraph.ui.MetaOmTablePanel.<init>(MetaOmTablePanel.java:676)
edu.iastate.metnet.metaomgraph.MetaOmGraph.projectOpened(MetaOmGraph.java:1867)
edu.iastate.metnet.metaomgraph.MetaOmGraph.access$2(MetaOmGraph.java:1856)
edu.iastate.metnet.metaomgraph.MetaOmGraph$OpenProjectWorker.finished(MetaOmGraph.java:2339)
edu.iastate.metnet.metaomgraph.AnimatedSwingWorker$1.run(AnimatedSwingWorker.java:93)
java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
java.base/java.security.AccessController.doPrivileged(AccessController.java:389)
java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:117)
java.desktop/java.awt.WaitDispatchSupport$2.run(WaitDispatchSupport.java:190)
java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
java.base/java.security.AccessController.doPrivileged(AccessController.java:389)
java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)

doesnt ID number of columns with study metadata correctly

From @evewurtele on April 23, 2018 14:50

(using maize study metadata .cvs file)

Copied from original issue: urmi-21/MOG-debugging#9

Is-it--possible-to-reorient-labels-in-box-plots-so-that-they-are-vertical,-underneath-each-box?--would-be-very-helpful-if-possible

Is your feature request related to a problem? Please describe.
A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]

Describe the solution you'd like
A clear and concise description of what you want to happen.

Describe alternatives you've considered
A clear and concise description of any alternative solutions or features you've considered.

Additional context
Add any other context or screenshots about the feature request here.

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email:
Comments:
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Mac OS X
Error log:

java.lang.NullPointerException
edu.iastate.metnet.metaomgraph.MetaOmProject.getAllDefaultRowNames(MetaOmProject.java:2409)
edu.iastate.metnet.metaomgraph.MetaOmProject.getRowIndexbyName(MetaOmProject.java:2347)
edu.iastate.metnet.metaomgraph.ui.StripedTable.getToolTipText(StripedTable.java:75)
javax.swing.ToolTipManager$insideTimerAction.actionPerformed(ToolTipManager.java:675)
javax.swing.Timer.fireActionPerformed(Timer.java:313)
javax.swing.Timer$DoPostEvent.run(Timer.java:245)
java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
java.awt.EventQueue.access$500(EventQueue.java:97)
java.awt.EventQueue$3.run(EventQueue.java:709)
java.awt.EventQueue$3.run(EventQueue.java:703)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

Show tips while MOG is busy

While doing some complex operations like loading projects, it would be great if MOG displays tips to user while waiting.

MetaOmBot: Bug report from user

MetaOmGraph Error:
Email:
Comments:
MOG version: v. 1.8.1
MOG date: February 20, 2020
OS: Mac OS X
Error log:

java.lang.NullPointerException
edu.iastate.metnet.metaomgraph.ui.TaskbarPanel$1.actionPerformed(TaskbarPanel.java:211)
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
javax.swing.AbstractButton.doClick(AbstractButton.java:376)
javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:842)
com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157)
javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:886)
java.awt.Component.processMouseEvent(Component.java:6539)
javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
java.awt.Component.processEvent(Component.java:6304)
java.awt.Container.processEvent(Container.java:2239)
java.awt.Component.dispatchEventImpl(Component.java:4889)
java.awt.Container.dispatchEventImpl(Container.java:2297)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
java.awt.Container.dispatchEventImpl(Container.java:2283)
java.awt.Window.dispatchEventImpl(Window.java:2746)
java.awt.Component.dispatchEvent(Component.java:4711)
java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
java.awt.EventQueue.access$500(EventQueue.java:97)
java.awt.EventQueue$3.run(EventQueue.java:709)
java.awt.EventQueue$3.run(EventQueue.java:703)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
java.awt.EventQueue$4.run(EventQueue.java:733)
java.awt.EventQueue$4.run(EventQueue.java:731)
java.security.AccessController.doPrivileged(Native Method)
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

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