variant-database / vdb Goto Github PK
View Code? Open in Web Editor NEWA SARS-CoV-2 Mutation Pattern Query Tool
License: Other
A SARS-CoV-2 Mutation Pattern Query Tool
License: Other
When using vdb
with the newest MSA from GISAID I got illegal hardware instruction
error. After turning off the -O
flag during the compilation I identified that this was an Swift/ContiguousArrayBuffer.swift:575: Fatal error: Index out of range
error. Some quick bug hunt led me to the issue which occurred on this line:
Line 379 in ab73f5e
The bufferSize
is set to 50,000 (thus limiting the size of refBuffer
array), while the refBufferPosition
gets the value >57,000.
I fixed this in my local repo by changing the following line:
Line 209 in ab73f5e
and setting the bufferSize
to 100,000.
Please let me know if you would like me to create a PR to fix this or whether this will be addressed in the future version.
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