varshini-reddy / pytorch-bayesiancnn Goto Github PK

We introduce Bayesian convolutional neural networks with variational inference, a variant of convolutional neural networks (CNNs), in which the intractable posterior probability distributions over weights are inferred by Bayes by Backprop. We demonstrate how our proposed variational inference method achieves performances equivalent to frequentist inference in identical architectures on several datasets (MNIST, CIFAR10, CIFAR100) as described in the paper.

This repository contains two types of bayesian lauer implementation:

• BBB (Bayes by Backprop):
  Based on this paper. This layer samples all the weights individually and then combines them with the inputs to compute a sample from the activations.

• BBB_LRT (Bayes by Backprop w/ Local Reparametrization Trick):
  This layer combines Bayes by Backprop with local reparametrization trick from this paper. This trick makes it possible to directly sample from the distribution over activations.

To make a custom Bayesian Network, inherit layers.misc.ModuleWrapper instead of torch.nn.Module and use BBBLinear and BBBConv2d from any of the given layers (BBB or BBB_LRT) instead of torch.nn.Linear and torch.nn.Conv2d. Moreover, no need to define forward method. It'll automatically be taken care of by ModuleWrapper.

For example:

class Net(nn.Module):

  def __init__(self):
    super().__init__()
    self.conv = nn.Conv2d(3, 16, 5, strides=2)
    self.bn = nn.BatchNorm2d(16)
    self.relu = nn.ReLU()
    self.fc = nn.Linear(800, 10)

  def forward(self, x):
    x = self.conv(x)
    x = self.bn(x)
    x = self.relu(x)
    x = x.view(-1, 800)
    x = self.fc(x)
    return x

Above Network can be converted to Bayesian as follows:

class Net(ModuleWrapper):

  def __init__(self):
    super().__init__()
    self.conv = BBBConv2d(3, 16, 5, strides=2)
    self.bn = nn.BatchNorm2d(16)
    self.relu = nn.ReLU()
    self.flatten = FlattenLayer(800)
    self.fc = BBBLinear(800, 10)

1. Add FlattenLayer before first BBBLinear block.
2. forward method of the model will return a tuple as (logits, kl).
3. priors can be passed as an argument to the layers. Default value is:

priors={
    'prior_mu': 0,
    'prior_sigma': 0.1,
    'posterior_mu_initial': (0, 0.1),  # (mean, std) normal_
    'posterior_rho_initial': (-3, 0.1),  # (mean, std) normal_
}

Currently, following datasets and models are supported.

• Datasets: MNIST, CIFAR10, CIFAR100
• Models: AlexNet, LeNet, 3Conv3FC

python main_bayesian.py

• set hyperparameters in config_bayesian.py

python main_frequentist.py

• set hyperparameters in config_frequentist.py

layers/: Contains ModuleWrapper, FlattenLayer, BBBLinear and BBBConv2d.
models/BayesianModels/: Contains standard Bayesian models (BBBLeNet, BBBAlexNet, BBB3Conv3FC).
models/NonBayesianModels/: Contains standard Non-Bayesian models (LeNet, AlexNet).
checkpoints/: Checkpoint directory: Models will be saved here.
tests/: Basic unittest cases for layers and models.
main_bayesian.py: Train and Evaluate Bayesian models.
config_bayesian.py: Hyperparameters for main_bayesian file.
main_frequentist.py: Train and Evaluate non-Bayesian (Frequentist) models.
config_frequentist.py: Hyperparameters for main_frequentist file.

There are two types of uncertainties: Aleatoric and Epistemic.
Aleatoric uncertainty is a measure for the variation of data and Epistemic uncertainty is caused by the model.
Here, two methods are provided in uncertainty_estimation.py, those are 'softmax' & 'normalized' and are respectively based on equation 4 from this paper and equation 15 from this paper.
Also, uncertainty_estimation.py can be used to compare uncertainties by a Bayesian Neural Network on MNIST and notMNIST dataset. You can provide arguments like:

1. net_type: lenet, alexnet or 3conv3fc. Default is lenet.
2. weights_path: Weights for the given net_type. Default is 'checkpoints/MNIST/bayesian/model_lenet.pt'.
3. not_mnist_dir: Directory of notMNIST dataset. Default is 'data\'.
4. num_batches: Number of batches for which uncertainties need to be calculated.

Notes:

1. You need to download the notMNIST dataset from here.
2. Parameters layer_type and activation_type used in uncertainty_etimation.py needs to be set from config_bayesian.py in order to match with provided weights.

If you are using this work, please cite:

@article{shridhar2019comprehensive,
  title={A comprehensive guide to bayesian convolutional neural network with variational inference},
  author={Shridhar, Kumar and Laumann, Felix and Liwicki, Marcus},
  journal={arXiv preprint arXiv:1901.02731},
  year={2019}
}

@article{shridhar2018uncertainty,
  title={Uncertainty estimations by softplus normalization in bayesian convolutional neural networks with variational inference},
  author={Shridhar, Kumar and Laumann, Felix and Liwicki, Marcus},
  journal={arXiv preprint arXiv:1806.05978},
  year={2018}
}
}