Comments (2)
carlottap
commented on May 28, 2024
I have the same issue.
curl: (16) Error in the HTTP2 framing layer
Error in download.file(paste("https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=", : 'curl' call had nonzero exit status
Could you find a solution? Thanks in advance.
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biodray
commented on May 28, 2024
I've got a similar error.
sh: 1: curl: not found
Error in download.file(paste("https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=", :
'curl' call had nonzero exit status
In addition: Warning message:
In system(paste("curl", paste(extra, collapse = " "), shQuote(url), :
error in running command
The function break when trying to download mitochondrial data...
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Related Issues (20)
- Compare each sequence against a mitochondrial reference before clustering and verify that primers are trimmed with BOLD api
- auto delete folders when downloading failed because of server error HOT 1
- add function to selectively trimm alignments HOT 1
- If no sequences are obtained, a ReadLines error occurs HOT 1
- Install issue HOT 5
- Include scoring table into primer miner it self! HOT 1
- include product annotation in mitogenome extractions! HOT 1
- 0.3 bases
- Add maximum sequence number to download!
- check how gaps are handled with ribosomal alignments
- NCBI download does currently not work HOT 2
- Error installing JAMP locally HOT 1
- Any option to get the species in each cluster? HOT 2
- update error matching
- Design Primers HOT 1
- Can't make plots from lower case fasta files
- plot_alignment step restrictions HOT 1
- not available for this version of R HOT 6
- PrimerMiner HOT 1
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