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stl2nii's Introduction

Hi! My name is Vicent Caselles Ballester. I am a Bioinformatics and Biostatistcs MSc student with a background in Biotech. I am somewhat of a novice in coding/programming/computer science, but I am very eager to learn and very curious. My interests are health sciences and maths, specially graph theory (or should I say network science?).

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stl2nii's Issues

Code Efficiency Recommendations

Thanks for your great jobs!
I found this code to be very inefficient:

for i in range(image.GetNumberOfPoints()):
image.GetPointData().GetScalars().SetTuple1(i, inval)

Maybe you can try the following code:

scalars = image.GetPointData().GetScalars()

from vtkmodules.util.numpy_support import vtk_to_numpy

scalar_array = vtk_to_numpy(scalars)

scalar_array[:] = inval

scalars.Modified()

The result is not quite right

thanks your works, i have one stl file label, want to convert .nii file. i only Modify the following code。but result is not quite。
image

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