vianamp / mitograph Goto Github PK

View Code? Open in Web Editor NEW

24.0 24.0 12.0 11.41 MB

Software for Quantifying Mitochondrial Content in Live Cells

License: GNU General Public License v2.0

C++ 98.15% CMake 0.61% R 1.25%

mitograph's People

Contributors

Stargazers

Watchers

Forkers

dinglyosu icaoberg harshad-deo sciencetoolkit tkreindler kristofkelemen sygongcode tskrzyp jonatanmdz21 iamsuyogjadhav carpemonf shixingwang

mitograph's Issues

GetX, GetY, GetZ and GetId are deprecated.

Replace this functions with ImageData -> FindPoint and ImageData -> GetPoint

Using MitoGraph on windows

Hi, is it posible to use MitoGraph in windows or will be in the future???
Ale

Is it exclusive to MacOS?

Hi,
Is MitoGraph exclusive to Mac OS?
-Arijit

Some small blobs are not skeletonized

Small blobs with bad conditioned topology are not skeletonized. This because all the voxels in these kind of blob represent a independent junction. After the merging process, all the voxels give rise a single isolated junction (node). Consequently, these blobs are mapped into nodes of degree zero and excluded from the final skeleton. In principle, these blobs could be detected by searching for connected component in which there are no transitive voxels. Transitive voxels are those that have exactly two neighbors after the thinning process.

Recommend Projects