Bobro is the an R package for prediction of cis-regulatory motifs in a given set of promoter sequences. The algorithm originally published by Ma et al, 2011 at Nucelic Acids Research(https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkq948). This package provides an R implementation of the Bobro algorithm, developed and maintained by the BMBL at OSU.
Make sure to check out the Examples and FAQ section to learn everything about the workflow.
- to-do
- R (>= 3.5.1)
- Windows, MacOS, Linux
You can install Bobro R package with:
library(remotes)
# to install the latest stable version (advised)
remotes::install_github("Wang-Cankun/Bobro")
- see <example.com> to-do
Howto’s and faqs examples:
- to-do
- Guojun Li, Bingqiang Liu, Qin Ma, Ying Xu, [A new framework for identifying cis-regulatory motifs in prokaryotes] (https://academic.oup.com/nar/article/39/7/e42/1151705), Nucleic Acids Research, Volume 39, Issue 7, 1 April 2011, Page e42, https://doi.org/10.1093/nar/gkq948