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mavr

various bioinformatic instruments

mmh

A simple pipeline to create and search HMM models against reference protein databases.

mouse_mm10_conserved_elements

code to identify conserved elements for mm10 mouse genome

muntjac_code

muntjac_code-1

my-custom-deployment

my-tools

python and R little tools use for proteome

my_pipeline_script

This Repository was myself script

nanopore-workflow

Working pipeline for nanopore + illumina data

newick_utils

shell tools for processing phylogenetic trees

ngs

Scripts for next generation sequencing

ngs-analysis

二代测序数据分析

nmgworkshop2021

Materials for BCBC NMGWorkshop2021

nucmer2circos

perl script to create input files for circos from nucmer or promer output

olfactory_receptor_genes

omics_utils

util scripts for various omics data analysis

oneliners

Useful bash one-liners for bioinformatics.

opsin_evolution

Code for Musilova et al.

ortho_parser

Scripts to parse OrthoFinder output

oskar_evolution

p.-ilicifolia-genome-project

The pipeline in the analyze of P. ilicifolia genome

pack-tir

codes and commands for detecting and analyzing pack-TIRs in animals

paleognaths

Here we demonstrates the analyses of whole-genome non-coding tree, and identification of sex-linked sequences

paml

This is code for running Orthofinder -> PAML

paml-runner

Determines whether positive selection is acting on a gene.

paper-zhang2014

Source code from Zhang et al., (2014) Genomic data of avian phylogenomics project. GigaScience 3:26

paper-zhang2014-1

parsing-repeatmasker-outputs

Few scripts facilitating the extraction of info from Repeat Masker .out files

pathway-gene-loss-analysis

Pathway reconstruction and identity gene loss

pcoc

Convergent substitution detection tool based on the PCOC model