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1000-genomes-genetic-maps

Genetic maps interpolated to sites in the 1000 Genomes project

1806

18.06 course at MIT

abchemoinformatics

:ab: ABC of chemoinformatics

abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

abyss

:microscope: Assemble large genomes using short reads

ac

A lossless compression tool for Amino Acid sequences

acc2tax

Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings

acfs

A pipeline for de novo circRNA identification

aclust

A-Clustering functions and analysis pipeline for methylation outcome data

adplugin

Autodock/Vina plugin for PyMol by Daniel Seeliger

adv-r

Advanced R programming: a book

aegean

Integrated toolkit for analysis and evaluation of annotated genomes

aeron

Alignment, quantification and fusion prediction from long RNA reads

aga

Annotated Genome Aligner

agapes

Gap filling based on template sequence for aDNA data

age

a tools that implements an algorithm for optimal alignment of sequences with structural variants (SVs)

agfusion

Python package to annotate and visualize gene fusions.

agfusiondb

agin

Process SMRT sequencing kinetic summary to predict regional methylation on large genome

akronymer

Ultrafast genome- and dataset-scale distance matrix and phylogenetic tree creation

alfred

BAM Statistics, Feature Counting and Annotation

alignment-and-variant-calling-tutorial

basic walk-throughs for alignment and variant calling from NGS sequencing data

alignment-from-vcf

Make fasta alignments from vcf files

alignmentbynumbers

Reference based alignment for mapping short reads to reference genome.

alitv

Visualize whole genome alignments as linear maps

aliview

Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:

all_vs_all_nt

MUMmer parser

allsorts

An Acute Lymphoblasitc Leukemia B-Cell classifier

alnbox

Alignment viewer based on the curses library

alphabetr

R package for obtaining TCR alpha-beta sequence pairs