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Location: Potomac, Maryland
Type: User
Location: Potomac, Maryland
A faster lmm for GWAS. Supports GPU backend.
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
Match up paired end fastq files quickly and efficiently.
Statistic illumina Fastq file
calculate base frequency and quality distribution from FASTQ file
Ultra Fast NGS Data QC Tool
A variational framework for inferring population structure from SNP genotype data.
De novo assembly based variant calling pipeline for Illumina short reads
Functional genomics and genome-wide association studies
Automatically exported from code.google.com/p/figtree
FASTA file parser to extract or pipeline amino acid sequences.
Program to extract small nucleotide motifs from Genome sequences
tools to find circRNAs in RNA-seq data
An important problem genomics scientists encounter regularly: how to identify genes in a strand of DNA. To tackle this problem, we need to understand strings: series of characters such as letters, digits, punctuation, etc. A gene for a protein has a start codon, followed by a substring that is a multiple of 3, followed by a stop codon.
Finding origin and terminus of replication in bacterial chromosomes
Find open reading frames in a DNA FASTA file.
An R client for broads firehose pipeline, providing TCGA data sets
Combined bash/R script performs specialized Fisher's exact test and generates p-value that shows significance for the overlap of two sets of genomic regions. Statistical test includes genomic background i.e. combined ENCODE set of open chromatin regions to calculate constituents of the Fisher exact test contingency matrix.
A repo of short "vignettes" illustrating statistical concepts; http://stephens999.github.io/fiveMinuteStats/analysis/
Fast Principal Component Analysis of Large-Scale Genome-Wide Data
Flexible Artificial Intelligence Docking
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
Flip - translates and reformats DNA sequences
Agent-based influenza epidemic model
FineMapping pipeline using GWAS summary statistics
Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
A model to identify organisms present in metagenomes in seconds
Pipeline to prepare alignments for visualization with ACT (goo.gl/1T28jX) and for locating possible inter-chromosomal re-arrengments/misjoints
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.