wangleiofficial / dsspparser Goto Github PK

The error above is what I get when I am trying to run your example code. specifically the following example code:

from DSSPparser import pdbToxssp
result = pdbToxssp("2GW9")

I believe this has something to do with the xssp-api wrapper tool you are using. I think they are having problems but there might be some patches you might be able to try to resolve this issue. Currenlyt, there doesn't seem to be a good solution to convert a PDB file to a DSSP file automatically.

Thanks for the help in advance!

Hello,

The example code displayed on the main page of the repo has a small typo in it. See errors here:

the line:

result = pdbToxssp("2GW9")
gives error

should be:

result = pdbToxssp_local("2GW9")

Best,

-Rich

PS. Thanks for fixing this code and for how responsive you are in this repo. Its definitely appreciated!

I installed it by pip install DSSPparser and then try to write this in my python console from DSSParser import parser but got the error "" ModuleNotFoundError: No module named 'DSSParser' ""

Hello there,

It looks like the local pdbToxssp_local works great for downloading the desired pdb_id but I have local pdb files that I want to try to convert to DSSP files. Is this possible with the new pdbToxssp_local method? If not can this be added please?

the input would be some local pdb file and the desired output is a local dssp file.

Thanks