wdecoster / fastqmetrics Goto Github PK

pip3 install fastqmetrics
Collecting fastqmetrics
  Downloading fastqmetrics-0.1.0.tar.gz
Collecting nanoget>=0.14.0 (from fastqmetrics)
  Downloading nanoget-0.14.0.tar.gz
Requirement already satisfied: pandas in /usr/local/lib/python3.6/site-packages (from nanoget>=0.14.0->fastqmetrics)
Requirement already satisfied: numpy in /usr/local/lib/python3.6/site-packages (from nanoget>=0.14.0->fastqmetrics)
Requirement already satisfied: biopython in /usr/local/lib/python3.6/site-packages (from nanoget>=0.14.0->fastqmetrics)
Requirement already satisfied: pysam>0.10.0.0 in /usr/local/lib/python3.6/site-packages (from nanoget>=0.14.0->fastqmetrics)
Requirement already satisfied: nanomath in /usr/local/lib/python3.6/site-packages (from nanoget>=0.14.0->fastqmetrics)
Requirement already satisfied: pytz>=2011k in /usr/local/lib/python3.6/site-packages (from pandas->nanoget>=0.14.0->fastqmetrics)
Requirement already satisfied: python-dateutil>=2 in /usr/local/lib/python3.6/site-packages (from pandas->nanoget>=0.14.0->fastqmetrics)
Requirement already satisfied: six>=1.5 in /usr/local/lib/python3.6/site-packages (from python-dateutil>=2->pandas->nanoget>=0.14.0->fastqmetrics)
Building wheels for collected packages: fastqmetrics, nanoget
  Running setup.py bdist_wheel for fastqmetrics ... done
  Stored in directory: /Users/username/Library/Caches/pip/wheels/5f/dc/83/88496d60b9a41ff9735641f32abe35bb4959f62a15fb292001
  Running setup.py bdist_wheel for nanoget ... done
  Stored in directory: /Users/username/Library/Caches/pip/wheels/fa/83/3a/68d4da094ce7e51c7fab77f87becd310f79b9f63a55627cf04
Successfully built fastqmetrics nanoget
Installing collected packages: nanoget, fastqmetrics
  Found existing installation: nanoget 0.13.1
    Uninstalling nanoget-0.13.1:
      Successfully uninstalled nanoget-0.13.1
Successfully installed fastqmetrics-0.1.0 nanoget-0.14.0

fastqmetrics --threads 2 ../demultiplexed_run1/data/BC10.fastq
Traceback (most recent call last):
  File "/usr/local/bin/fastqmetrics", line 7, in <module>
    from fastqmetrics.fastqmetrics import main
  File "/usr/local/lib/python3.6/site-packages/fastqmetrics/fastqmetrics.py", line 1, in <module>
    from nanoget import stream_fastq_full
ImportError: cannot import name 'stream_fastq_full'