Comments (11)
Do you think it would be possible to share that file with me to debug?
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There is a column of index numbers in the file which shouldn't be there. You can fix it with:
zcat chr10_methylation_calls.tsv.gz | cut -f2- | gzip > fixed_calls.tsv.gz
The output of that command worked for me with methplotlib.
Did you do any manual manipulations to that file or is it straight from nanopolish? If so, which version did you use?
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-w ch10:6,000-7,000
is that a typo here on GitHub or did you use chr10?
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But did you do -w ch10 or -w chr10? Which command exactly caused the problem?
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Thanks for following up! That sounds likely to be the issue, but methplotlib should give you a better error message there. I'll take care of it.
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Thanks for your patience, methplotlib should now give you a better error message (in version 0.14.1).
Please let me know if you encounter further issues.
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