Hi, I ran into a weird python import issue, tested with python 3.8.12 and python 3.6.1

Did you install with pip or conda? What is the version of your <code class="notranslat

Python import issue about methplotlib HOT 5 CLOSED

Eric-CH-Chen commented on August 16, 2024

Python import issue

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Comments (5)

wdecoster commented on August 16, 2024

Thanks for the report and the potential solution! Which version of plotly do you have?

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Eric-CH-Chen commented on August 16, 2024

No worries!
Via pip list, they are both version 5.8.0 in my two environments.

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YingziZhang-github commented on August 16, 2024

Hi,
I met with a python import issue also. Would you please help look into it?

CMD:
(base) ➜ ~ /Users/zhany0s/miniconda3/bin/methplotlib

Error:

Traceback (most recent call last):
  File "/Users/zhany0s/miniconda3/bin/methplotlib", line 5, in <module>
    from methplotlib.methplotlib import main
  File "/Users/zhany0s/miniconda3/lib/python3.7/site-packages/methplotlib/methplotlib.py", line 1, in <module>
    import methplotlib.plots as plots
  File "/Users/zhany0s/miniconda3/lib/python3.7/site-packages/methplotlib/plots.py", line 2, in <module>
    from methplotlib.annotation import parse_annotation, parse_bed
  File "/Users/zhany0s/miniconda3/lib/python3.7/site-packages/methplotlib/annotation.py", line 2, in <module>
    import pyranges as pr
  File "/Users/zhany0s/miniconda3/lib/python3.7/site-packages/pyranges/__init__.py", line 137, in <module>
    import pyranges.genomicfeatures as gf
  File "/Users/zhany0s/miniconda3/lib/python3.7/site-packages/pyranges/genomicfeatures.py", line 7, in <module>
    from sorted_nearest.src.introns import find_introns
  File "/Users/zhany0s/miniconda3/lib/python3.7/site-packages/sorted_nearest/__init__.py", line 7, in <module>
    from sorted_nearest.src.k_nearest_ties import get_all_ties, get_different_ties
ImportError: cannot import name 'get_all_ties' from 'sorted_nearest.src.k_nearest_ties' (/Users/zhany0s/miniconda3/lib/python3.7/site-packages/sorted_nearest/src/k_nearest_ties.cpython-37m-darwin.so)

Thank you very much.

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wdecoster commented on August 16, 2024

Did you install with pip or conda? What is the version of your sorted_nearest module?

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YingziZhang-github commented on August 16, 2024