Giter VIP home page Giter VIP logo

Comments (5)

wdecoster avatar wdecoster commented on August 16, 2024

Could you share a few lines of your file?

from methplotlib.

KloostermanJoukje avatar KloostermanJoukje commented on August 16, 2024

Here are a few files:
(No header)

1 12331 12332 0 2
1 12355 12356 0 2
1 12426 12427 0 2
1 12506 12507 0 3
1 12521 12522 0.33333334 3
1 12558 12559 0 3
1 12586 12587 0 3
1 12672 12673 0 4

from methplotlib.

KloostermanJoukje avatar KloostermanJoukje commented on August 16, 2024

I have a similar issue with my bed file

I ran modkit with the --only-tabs option, but the file was not recognized.
A few lines from the file:
(No header)

1       10468   10469   h       1       +       10468   10469   255,0,0 1       0.00    0       0       1       1       0       0       0
1       10468   10469   m       1       +       10468   10469   255,0,0 1       100.00  1       0       0       1       0       0       0
1       10469   10470   h       2       -       10469   10470   255,0,0 2       0.00    0       1       1       0       0       0       0
1       10469   10470   m       2       -       10469   10470   255,0,0 2       50.00   1       1       0       0       0       0       0
1       10471   10472   h       1       -       10471   10472   255,0,0 1       0.00    0       0       1       0       0       0       0

My command used:

methplotlib -m /test.bed -n test -w chrX:146,991,437-147,034,645

from methplotlib.

KloostermanJoukje avatar KloostermanJoukje commented on August 16, 2024

@wdecoster

I have been comparing the utils.py file, and it seems that my version (installed using pip) is deprecated...

Any idea why using pip to install, does not yield the latest version as seen on guthub?

I also see that the version using conda is from 1 year and 7 months ago, so i suppose using that to download wont help much.

from methplotlib.

KloostermanJoukje avatar KloostermanJoukje commented on August 16, 2024

@wdecoster can you help me??

Could you update methplotlib for pip installation and/or conda?

from methplotlib.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.