Comments (5)
Could you share a few lines of your file?
from methplotlib.
Here are a few files:
(No header)
1 12331 12332 0 2
1 12355 12356 0 2
1 12426 12427 0 2
1 12506 12507 0 3
1 12521 12522 0.33333334 3
1 12558 12559 0 3
1 12586 12587 0 3
1 12672 12673 0 4
from methplotlib.
I have a similar issue with my bed file
I ran modkit with the --only-tabs
option, but the file was not recognized.
A few lines from the file:
(No header)
1 10468 10469 h 1 + 10468 10469 255,0,0 1 0.00 0 0 1 1 0 0 0
1 10468 10469 m 1 + 10468 10469 255,0,0 1 100.00 1 0 0 1 0 0 0
1 10469 10470 h 2 - 10469 10470 255,0,0 2 0.00 0 1 1 0 0 0 0
1 10469 10470 m 2 - 10469 10470 255,0,0 2 50.00 1 1 0 0 0 0 0
1 10471 10472 h 1 - 10471 10472 255,0,0 1 0.00 0 0 1 0 0 0 0
My command used:
methplotlib -m /test.bed -n test -w chrX:146,991,437-147,034,645
from methplotlib.
I have been comparing the utils.py file, and it seems that my version (installed using pip) is deprecated...
Any idea why using pip to install, does not yield the latest version as seen on guthub?
I also see that the version using conda is from 1 year and 7 months ago, so i suppose using that to download wont help much.
from methplotlib.
@wdecoster can you help me??
Could you update methplotlib for pip installation and/or conda?
from methplotlib.
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from methplotlib.