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mimosca

A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.

ml

mlxtend

A library of extension and helper modules for Python's data analysis and machine learning libraries.

music

neofusion

nmt

TensorFlow Neural Machine Translation Tutorial

oncofuse

Predicting oncogenic potential of gene fusions

pmsignature

R package for extracting mutation signatures from a list of somatic mutations

practical_seq2seq

A simple, minimal wrapper for tensorflow's seq2seq module, for experimenting with datasets rapidly

prep

PREP: Prioritizing of RNA Editing-based Peptides

pymc3

Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano

pypy_get_pip

pytorch-metric-learning

The easiest way to use deep metric learning in your application. Modular, flexible, and extensible. Written in PyTorch.

scater

Single cell analysis tools for expression from RNA-seq in R

scde

R package for analyzing single-cell RNA-seq data

scholar.py

A parser for Google Scholar, written in Python

scikit-learn

scikit-learn: machine learning in Python

scrna.seq.course

Analysis of single cell RNA-seq data course, Cambridge University, UK

sepa

seq2seq

Sequence to Sequence Learning with Keras

seq2seq-chatbot

Chatbot in 200 lines of code / Please Star -->

shadowsocks-windows

If you want to keep a secret, you must also hide it from yourself.

simlr

Single-cell Interpretation via Multi-kernel Learning (R code in master branch, Matlab code in matlab branch), implementations of the method published in http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.4207.html. Also see http://biorxiv.org/content/early/2017/03/21/118901 for a description of the software.

singlecellseq

Batch effects and the effective design of single-cell gene expression studies

specifications

GFF and GVF specification documents

sra-tools

SRA Tools

stanford-tensorflow-tutorials

This repository contains code examples for the course CS 20SI: TensorFlow for Deep Learning Research.

tcr

tensorflow-examples

TensorFlow Tutorial and Examples for Beginners with Latest APIs

tensorlayer

TensorLayer: Deep Learning and Reinforcement Learning Library for Researcher and Engineer.