Comments (5)
Thanks for reporting this and for including an example file. I'll have a look and let you know what I find.
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Thanks Derek,
I believe I have found the issue, but need to make sure the fix doesn't impact reading other FCS files. I should have an updated release with the fix this week.
from flowio.
In case it helps, I also see this error with v3.0 and v3.1 fcs files exported from a Sony SH800S
from flowio.
I've fixed the issue reading these files in the latest version of FlowIO (version 0.9.6). If you could, please verify the latest version resolves the issue, and if not I will re-open. Thanks again for submitting the bug report!
from flowio.
Works now for both v3.0 and v3.1 fcs files on my end! Thanks @whitews
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Related Issues (15)
- Removing a channel HOT 2
- Missing set zeroes if data offsets are greater than header max data size HOT 3
- Error when exporting some FCS files: REPORT BUG: error calculating text offset
- Open files containing multiple datasets HOT 5
- Getting event data as an Int but expecting a float? HOT 2
- Missing license HOT 5
- Clarify parsing of examples/fcs_files/100715.fcs HOT 4
- Better handling of data section byte offset discrepancy
- Incorrect estimation of data_stop HOT 7
- Support for FCS3.2 HOT 2
- Question about flow cytometry data HOT 1
- FlowData.write_fcs attempts to write strings to file opened in binary mode HOT 5
- write_fcs mixes up PNN and PNS labels HOT 1
- Parsing an FCS file with variable int sizes fails raises an exception (and it could parse much faster) HOT 3
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