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Current Repository for the WikiPathways Web Site

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This repository contains the code and development history of the main web site for the WikiPathways project: wikipathways.org. Built upon MediaWiki, the site includes numerous custom extensions, javascript, skins and hacks.

How to Contribute

Installation

We do not recommend attempting to install this site code as-is. There are many parts and services required that are not included here. Contact one of the architects for more details.

If you do attempt to install, note instructions in the README.md files in each subdirectory of wpi/extensions/, e.g., GPMLConverter and Pathways.

Contributing Pathway Content

If you are interested in adding or editing pathway diagrams, check out these resources:

Old Repo: http://svn.bigcat.unimaas.nl/wikipathways/

WikiPathways's Projects

wikipathways-rdf icon wikipathways-rdf

Repository where the WikiPathways RDF will be generated based on the new libGPML library

wikipathwayscurator icon wikipathwayscurator

Unit tests that validate the WikiPathways content and support the curation of the knowledge base.

wikipedia-template icon wikipedia-template

This repo contains the necessary scripts and documentation for creating Wikipedia templates of WikiPathways content

wp-rdf-api icon wp-rdf-api

OpenAPI to extract information from WikiPathways.

wp2lod icon wp2lod

Java source for conversion of WikiPathways GPML to triples

wpreactomeuploader icon wpreactomeuploader

Script to Upload Reactome pathways in Wikipathways using the Wikipathways webservice

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