will-moore / i2k-2020-zarr-workshop Goto Github PK

https://s3.embassy.ebi.ac.uk/idr/zarr/v0.1/6001247.zarr/labels/0/.zattrs

"color": {
        "1": -2139062144,
        "10": -2139062144,
        "11": -2139062144,

Should be:

"image-label":
  {
    "colors": [
      {
        "label-value": 1,
        "rgba": [255, 255, 255, 0]
      },

And it should also contain multiscales dict to point to zarray in sub-directory. But here the .zarray is in the same
https://s3.embassy.ebi.ac.uk/idr/zarr/v0.1/6001247.zarr/labels/0/.zarray dir.

Once this is fixed, need to update the ome-zarr-intro.ipynb

One of the participants suggested we use data from:
http://celltrackingchallenge.net/3d-datasets/

We want to demo functionality from:

Label properties:
ome/ome-zarr-py#61

Plates (including labels):
ome/ome-zarr-py#62