02750al's Introduction
matlab/run.sh -- will run on PPI and PF once created (5 times 5 fold cross validation) plasDB/formatData.sh --> labeled.csv (with Gene IDs) --> labeled.arff (without Gene IDS) use llinas_maxOverAll.txt with > 9 as positive for diff expressed - 2 fold change, 70 percentile matlab/generateMAT.m plasDB/labeled.csv --> matlab/genes.mat structure genes.{labels,feats,featnames,names} matlab/runAL.m runAL({'RFRandom' ....},'PF',i) * last two inputs optional matlab/plotAL.m plotAL('PF',{'RFRandom' ....}) * last input optional wekaShortcuts.sh source-ing provies wekacli: run weka with arff generated by format data with given classifier and params eg. wekacli tree weka.classifiers.trees.J48 -C 0.25 -M 2 saves wekaout/tree-date wekainfo: shows % accuracy for a given weka output (likely in wekaout) eg. wekainfo wekaout/tree-2011-11-19 wekaRuns.sh run different learning algorithms (tree, nb, kmeans) [svm is sooo slow]
02750al's People
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. ๐๐๐
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google โค๏ธ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.