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How to install abaqus 2017 in a singularity container and get hardware-accelerated graphics
I wrote a bug-report to the support
I got the reply:
To Submitter 09/15/2020 02:55:17PM
Hallo Johannes,
the issue you reported seems to be related to the following documented bug:
Article ID : BR10000291796
Abstract : Abaqus/Standard analyses enter an infinite loop if the job attempts to exit with an error on SLES 15 and Redhat 8 Linux systems.
Link : https://kb.dsxclient.3ds.com/mashup-ui/page/document?q=docid:BR10000291796
"When running on SLES 15 and Redhat 8 Linux systems, Abaqus/Standard analyses enter an infinite loop if the job attempts to exit with an error on SLES 15 and Redhat 8 Linux systems. The infinite loop occurs during shutdown of the standard process execution. The post analysis cleanup processes are not executed.
abaqus -job test terminate does not terminate this job. The Linux kill command must be used to terminate the job.
More specifically, this issue occurs on any Linux system that contains glibc version 2.25 or later. "
This bug is fixed in the latest Abaqus 2020 HF5 (2020 FP.CFA.2038) release, which will be available for download until the end of this week. Until you can install this version, you may use the Abaqus 2018-HF16 or Abaqus 2019-HF10 (or later) releases, which also contain this bug fix.
Please let us know, if the issue is not gone even in the mentioned Abaqus releases.
Best Regards
You can find the local support-addresses at https://www.3ds.com/products-services/simulia/services-support/locations/ or write to support.dsxeco(at)3ds.com
I downloaded Part_SIMULIA_EstPrd - SIMULIA Abaqus 2020 FP.CFA.2038 - Linux64
from https://software.3ds.com/ and installed Part_SIMULIA_EstPrd.Linux64/1/Software/SIMULIA_EstPrd.HF5.Linux64/1/StartTUI.sh
as well as Part_SIMULIA_EstPrd.Linux64/1/Software/CAASIMULIA_EstPrd.HF5.Linux64/1/StartTUI.sh
and now it works on Ubuntu 20.04 without singularity-container.
@willfurnass For Abaqus 2018 they published a HotFix 16, which should also solve the problem.
Hello,
running a job using parallelization via MPI causes following error:
singularity exec abaqus-2017-centos-7.simg abaqus j=abaqus_test2017 cpus=8 interactive
results in
Analysis initiated from SIMULIA established products
Abaqus JOB abaqus_test2017
Abaqus 3DEXPERIENCE R2017x
Abaqus License Manager checked out the following licenses:
Abaqus/Standard checked out 12 tokens from Flexnet server ********
<87 out of 125 licenses remain available>.
Begin Analysis Input File Processor
Wed 08 Aug 2018 01:11:18 PM CEST
Run pre
bash: /opt/abaqus/2017/V6R2017x/linux_a64/code/bin/SMAExternal/pmpi-9.1.2/bin/mpid: No such file or directory
mpirun: Warning one or more remote shell commands exited with non-zero status, which may indicate a remote access problem.
Wed 08 Aug 2018 01:11:18 PM CEST
Abaqus Error: Analysis Input File Processor exited with an error.
Begin MFS->SFS and SIM cleanup
Wed 08 Aug 2018 01:11:18 PM CEST
Run SMASimUtility
Wed 08 Aug 2018 01:11:18 PM CEST
End MFS->SFS and SIM cleanup
Abaqus/Analysis exited with errors
Host system is an up-to-date Manjaro distribution
Note that this issue occurs for real MPI jobs only, for instance if the iterative solver is chosen by solver=iterative
in the *step
keyword.
Using parallelization via threads as it is default for the direct solver caues no error and works as intended, so to reproduce the error the iterative solver may be chosen.
Hi @willfurnass. Thanks for putting this script out there, it's very useful!
I'm having some trouble running the build script with singularity 3.0. More specifically, I encounter a segfault when installing AbaqusServices ksh ./2/SIMULIA_AbaqusServices/Linux64/1/StartTUI.sh
:
Executing application /usr/DassaultSystemes/SimulationServices/V6R2017x/linux_a64/code/bin/DSYEnvMgt...
*** Error in `/usr/DassaultSystemes/SimulationServices/V6R2017x/linux_a64/code/bin/DSYEnvMgt': free(): invalid pointer: 0x00007f7e1d4667b8 ***
I was wondering if you ever had a similar issue, and if so if you have any idea how to solve it? The weird thing is that the installation seems to go through if I use the interactive installation in sandbox mode.
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