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v2rayn

v2rayng

vadr

Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation

vagrant

Vagrant is a tool for building and distributing development environments.

vapid

VAPiD: Viral Annotation and Identification Pipeline

variant-effect-predictor-tool

variant-qc

Quality control methods for human genomic variants.

variantqc

Variant quality checking scripts.

varianttools

software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis

varscan

Variant calling and somatic mutation/CNV detection for next-generation sequencing data

varsim

VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

vawk

An awk-like VCF parser

vcf-annotator

Add biological annotations to variants in a given VCF file.

vcf2dis

VCF2Dis: A new simple and efficient software to calculate p-distance matrix based Variant Call Format

vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

vcfanno

annotate a VCF with other VCFs/BEDs/tabixed files

vdhcoapp

Companion application for Video DownloadHelper browser add-on

vegan

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis

velvet

Short read de novo assembler using de Bruijn graphs

verkko

A hybrid genome assembly pipeline developed for telomere-to-telomere assembly

vg

tools for working with genome variation graphs

vgp-assembly

VGP repository for the genome assembly working group

vibrant

Virus Identification By iteRative ANnoTation

vica

Vica: Software to identify highly divergent DNA and RNA viruses and phages in microbiomes

vir

ViR is designed to solve the dispersion of reads due to intrasample variability for a reliable identification of lateral gene transfer events, with a focus on viral integrations

viral-ngs

Viral genomics analysis pipelines

viral-pipelines

viral-ngs: complete pipelines

virfinder

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

virmet

Set of tools for viral metagenomics.

viroblaststandalone

ViroBLAST standalone package