Wu Aiping Lab's Projects
Conda recipes for the bioconda channel.
A semi-automatic coronavirus genome annotation tool
A method to detect the inter-lineage recombinant of SARS-CoV-2
The simulation test for the CovRecomb method using SARS-CoV-2 datasets.
A subsampling method for large-scale SARS-CoV-2 genome data sets
Some tools to treat aligned genome sequence.
Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
RECDS identifies cluster-transition determining sites underlying the antigenic evolution of seasonal influenza viruses
A computational method to identify the compositional lineage(s) in SARS-CoV-2 infected samples
SARS-CoV-2 early outbreak analysis. Two polymorphism sites 8517 and 27641 (CDS numbering) were found to genotype the early strains.
Source code for the commentary paper
SARS-CoV-2 paraFix mutations
Website for SARS-CoV-2 genome evolution research
Early Introduction and Community Transmission of SARS-CoV-2 Omicron Variant, New York, New York, USA
Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.
Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations
Test sitePath
Command line executable for sitePath
The pipeline to replace our CLC workbench
A general pipeline constructed for viral metagenomes analysis from NGS read data.