Python Framework for Generating Diagnostics from CESM

CUPiD is a collaborative effort that unifies all CESM component diagnostics and provides

• Python code that
  1. runs in an easy-to-generate conda environment, and
  2. can be launched via CIME workflow or independently
• Diagnostics for single/multiple runs and single/multiple components
• Ability to call post-processing tools that other groups are working on
• An API that makes it easy to include outside code
• Ongoing support and software maintenance

To install CUPiD, you need to check out the code and then set up a few environments. The initial examples have hard-coded paths that require you to be on casper.

The code relies on submodules to install manage_externals and then uses manage_externals for a few packages that are still being developed, so the git clone process is a little more complicated than usual:

$ git clone --recurse-submodules https://github.com/NCAR/CUPiD.git
$ cd CUPiD
$ ./manage_externals/checkout_externals

Then build the necessary conda environments with

$ conda env create -f cupid/dev-environment.yml
$ conda activate cupid-dev
$ which cupid-run
$ conda env create -f cupid-analysis.yml

Notes:

1. conda now defaults to using mamba to solve environments; the cupid-analysis.yml environment is complicated, so older versions of conda should be updated (conda update -n base conda) or you should use mamba instead.
2. If ./manage_externals/checkout_externals is not found, run git submodule update --init to clone the submodule.
3. If which cupid-run returned the error which: no cupid-run in ($PATH), then please run the following:

$ conda activate cupid-dev
$ pip install -e .  # installs cupid

CUPiD currently provides two examples for generating diagnostics. To test the package out, try to run examples/adf-mom6:

$ conda activate cupid-dev
$ cd examples/adf-mom6
$ cupid-run config.yml
$ cupid-build config.yml # Will build HTML from Jupyter Book

After the last step is finished, you can use Jupyter to view generated notebooks in ${CUPID_ROOT}/examples/adf-mom6/computed_notebooks/adf-quick-run or you can copy the entire ${CUPID_ROOT}/examples/adf-mom6/computed_notebooks/adf-quick-run/_build/html directory to your local machine and look at index.html in a web browser.