Related Issues (20)
- Read minimum length & small RNA mapping HOT 3
- A question on RPKM calculation HOT 2
- Checkm2 tsv for `coverm cluster --checkm-tab-table` HOT 1
- Coverm filter inverse paired reads HOT 4
- Question about TPM HOT 2
- Calculations of min-read-percent-identity and min-read-aligned-length HOT 2
- Zero covered bases and mean coverage but non-zero reads mapping
- --contig-end-exclusion doesn't work with -m not set to mean HOT 2
- Feature request: Handle secondary alignments and new release HOT 5
- CoverM reports near 0 reads mapped despite almost all reads seemingly being mapped HOT 5
- Extracting bam files HOT 1
- CoverM to assess genomes relative proportion in Metatranscriptomics data?
- How can I provide extra parameters to BWA using the "--bwa-params" option? HOT 3
- [2023-06-04T07:45:16Z INFO coverm::contig] In sample 'cdhit_rep_seq.fna/SRR13083091_1.fq.gz', found 0 reads mapped out of 0 total (NaN%) HOT 3
- libtinfow.so.6: no version information available (required by samtools) HOT 2
- Q: coverM compatible with bowtie2 HOT 1
- default rep seq picking method HOT 2
- Unable to find BAM file when file exists HOT 2
- thread 'main' panicked at 'index out of bounds: the len is 6564 but the index is 6586' HOT 4
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